miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24027 5' -58.4 NC_005262.1 + 765 0.71 0.31328
Target:  5'- aCGCGCUcGUCGcCGAGGUUCGGGCgugGCu -3'
miRNA:   3'- -GCGCGA-CAGCuGUUCCGGGUCUGg--CG- -5'
24027 5' -58.4 NC_005262.1 + 3342 0.72 0.277688
Target:  5'- uGuCGCUGaUGACGAGGCCgCGGcucgcuagauGCCGCa -3'
miRNA:   3'- gC-GCGACaGCUGUUCCGG-GUC----------UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 5050 0.72 0.264381
Target:  5'- gGCGcCUGaUCGGCGggcAGGCCCGcGGCgGCg -3'
miRNA:   3'- gCGC-GAC-AGCUGU---UCCGGGU-CUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 49140 0.72 0.264381
Target:  5'- gGCGaagGUCGGCAcgguGGGCgugCAGGCCGCa -3'
miRNA:   3'- gCGCga-CAGCUGU----UCCGg--GUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 40592 0.68 0.488089
Target:  5'- uCGCGCUGaCGGu--GGCgCAGauGCCGCa -3'
miRNA:   3'- -GCGCGACaGCUguuCCGgGUC--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 52321 0.68 0.498034
Target:  5'- aGCGCUc-CGgaACAAGGCgCCGGACgCGUa -3'
miRNA:   3'- gCGCGAcaGC--UGUUCCG-GGUCUG-GCG- -5'
24027 5' -58.4 NC_005262.1 + 54478 0.68 0.498034
Target:  5'- gGCGCUGcUCGcgguGCAgccgaagccgcuGGGCCC-GACCGa -3'
miRNA:   3'- gCGCGAC-AGC----UGU------------UCCGGGuCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 51932 0.66 0.58984
Target:  5'- --aGCUGUUcacgacgGACAAGGUggAGGCCGCu -3'
miRNA:   3'- gcgCGACAG-------CUGUUCCGggUCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 38546 0.66 0.580354
Target:  5'- uCGCGgUGacgaUCGGCAccGCCgCGGGCCGg -3'
miRNA:   3'- -GCGCgAC----AGCUGUucCGG-GUCUGGCg -5'
24027 5' -58.4 NC_005262.1 + 49838 0.66 0.580354
Target:  5'- aGCGCg--CGAau-GGCCCGGuGCCGg -3'
miRNA:   3'- gCGCGacaGCUguuCCGGGUC-UGGCg -5'
24027 5' -58.4 NC_005262.1 + 43714 0.66 0.580354
Target:  5'- aCGCGCUcacCGACAagaAGGUCgAaACCGCg -3'
miRNA:   3'- -GCGCGAca-GCUGU---UCCGGgUcUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 36295 0.66 0.579302
Target:  5'- aCGCGaacaccucgGUCGACuucggugGGGGgCCGGugCGCu -3'
miRNA:   3'- -GCGCga-------CAGCUG-------UUCCgGGUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 45104 0.66 0.569852
Target:  5'- cCGCGCUcaacUCGGCGGGuGCCgCGaacACCGCg -3'
miRNA:   3'- -GCGCGAc---AGCUGUUC-CGG-GUc--UGGCG- -5'
24027 5' -58.4 NC_005262.1 + 49761 0.66 0.569852
Target:  5'- gGCGCccgCGccCGAGGCUCcGGCCGCu -3'
miRNA:   3'- gCGCGacaGCu-GUUCCGGGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 35168 0.66 0.569852
Target:  5'- gCGaCGCUGgCGGCAaugAGGUCaC-GACCGCc -3'
miRNA:   3'- -GC-GCGACaGCUGU---UCCGG-GuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 1040 0.67 0.559398
Target:  5'- gGCGU--UCGACAAuaggcgcgaucGGCCCGGAgCCGa -3'
miRNA:   3'- gCGCGacAGCUGUU-----------CCGGGUCU-GGCg -5'
24027 5' -58.4 NC_005262.1 + 58699 0.67 0.559398
Target:  5'- gCGCaacaaGCUGgCGGCAugcccgAGGCgCuGACCGCg -3'
miRNA:   3'- -GCG-----CGACaGCUGU------UCCGgGuCUGGCG- -5'
24027 5' -58.4 NC_005262.1 + 12174 0.67 0.508069
Target:  5'- cCGCGCUGUcugcgCGGCAGGagcaaaucGCgCAGAUgGCg -3'
miRNA:   3'- -GCGCGACA-----GCUGUUC--------CGgGUCUGgCG- -5'
24027 5' -58.4 NC_005262.1 + 25411 0.67 0.508069
Target:  5'- gGCGCUGUUucggGACAAGGUaaAGuuCGCc -3'
miRNA:   3'- gCGCGACAG----CUGUUCCGggUCugGCG- -5'
24027 5' -58.4 NC_005262.1 + 24730 0.68 0.498034
Target:  5'- uCGCGCUGgcgcgcgcgaUCGGCGugcGGCCgaaguggauuCAGcACCGCg -3'
miRNA:   3'- -GCGCGAC----------AGCUGUu--CCGG----------GUC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.