miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24028 3' -57.9 NC_005262.1 + 17072 0.66 0.593537
Target:  5'- cGGCGccgauAGGCGCGCCCguCGAc-GCGGCGg -3'
miRNA:   3'- cUCGU-----UCCGCGUGGG--GCUcaUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 13033 0.66 0.593537
Target:  5'- aGGGCuacgcGGUGCGCgUCGAGcUGCGGCc -3'
miRNA:   3'- -CUCGuu---CCGCGUGgGGCUC-AUGUCGu -5'
24028 3' -57.9 NC_005262.1 + 18956 0.66 0.582747
Target:  5'- -cGCAAGGCGCugCuCCGGaUGC-GCu -3'
miRNA:   3'- cuCGUUCCGCGugG-GGCUcAUGuCGu -5'
24028 3' -57.9 NC_005262.1 + 4030 0.66 0.582747
Target:  5'- -uGCAcGGUGCugCCUGAGUAacaugacaaaAGCGa -3'
miRNA:   3'- cuCGUuCCGCGugGGGCUCAUg---------UCGU- -5'
24028 3' -57.9 NC_005262.1 + 9798 0.66 0.571997
Target:  5'- -cGCGuauGGCGC-CCUCGGGUuuGGCGc -3'
miRNA:   3'- cuCGUu--CCGCGuGGGGCUCAugUCGU- -5'
24028 3' -57.9 NC_005262.1 + 54203 0.66 0.570925
Target:  5'- aGGCGAGG-GCGCCgucgacgUCGAGgcGCAGCAg -3'
miRNA:   3'- cUCGUUCCgCGUGG-------GGCUCa-UGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 48472 0.66 0.561296
Target:  5'- cAGCGAGGCGCGgucguaaCCCGAcugAUAGCc -3'
miRNA:   3'- cUCGUUCCGCGUg------GGGCUca-UGUCGu -5'
24028 3' -57.9 NC_005262.1 + 13813 0.66 0.550649
Target:  5'- uGGCAcGGCGUGCCaCCGAc--CAGCAc -3'
miRNA:   3'- cUCGUuCCGCGUGG-GGCUcauGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 49844 0.67 0.540066
Target:  5'- gGAGCcucGGGCGCgggcGCCgCCGgcgucGGUGCGGCu -3'
miRNA:   3'- -CUCGu--UCCGCG----UGG-GGC-----UCAUGUCGu -5'
24028 3' -57.9 NC_005262.1 + 53537 0.67 0.540066
Target:  5'- cGAGUAuuucgccGCGUACCCCGAGaUGguGCu -3'
miRNA:   3'- -CUCGUuc-----CGCGUGGGGCUC-AUguCGu -5'
24028 3' -57.9 NC_005262.1 + 20920 0.67 0.539011
Target:  5'- aGAGCGGGuGcCGCGCCCCGcgauGUucccugucgauucGCGGCu -3'
miRNA:   3'- -CUCGUUC-C-GCGUGGGGCu---CA-------------UGUCGu -5'
24028 3' -57.9 NC_005262.1 + 45677 0.67 0.536904
Target:  5'- cGGUGAGGCGguCCCaaaacggccgcaucaGGUACAGCAg -3'
miRNA:   3'- cUCGUUCCGCguGGGgc-------------UCAUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 13191 0.67 0.529552
Target:  5'- cGGUAAGGCuaACCCUGGuccGUGCGcGCAa -3'
miRNA:   3'- cUCGUUCCGcgUGGGGCU---CAUGU-CGU- -5'
24028 3' -57.9 NC_005262.1 + 44958 0.67 0.529552
Target:  5'- gGAGCAGauGGC-CGCCgaggcgagggCCGAcGUGCAGCAg -3'
miRNA:   3'- -CUCGUU--CCGcGUGG----------GGCU-CAUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 11017 0.67 0.507727
Target:  5'- cGAGCGAGGCggcugucGCGCaagaCCGcGcGCAGCAa -3'
miRNA:   3'- -CUCGUUCCG-------CGUGg---GGCuCaUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 15581 0.67 0.507727
Target:  5'- gGAGCugGAGGCGCGCgCgCgCGAggagcgcGUGCGGCAg -3'
miRNA:   3'- -CUCG--UUCCGCGUG-G-G-GCU-------CAUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 28044 0.67 0.49849
Target:  5'- aGAGCu-GGCGCAacaucCUCUGGG-ACAGCAc -3'
miRNA:   3'- -CUCGuuCCGCGU-----GGGGCUCaUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 15477 0.67 0.488316
Target:  5'- aAGCAcGGCGCuuaCaCCGAGcGCGGCGg -3'
miRNA:   3'- cUCGUuCCGCGug-G-GGCUCaUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 28517 0.69 0.423847
Target:  5'- cGAGCAcGGCGCGgCCCGAuucgaccucgagcacGUGCcGCu -3'
miRNA:   3'- -CUCGUuCCGCGUgGGGCU---------------CAUGuCGu -5'
24028 3' -57.9 NC_005262.1 + 23929 0.69 0.420104
Target:  5'- cGGCAAGGCGU-UUCUGGGUcCAGCAa -3'
miRNA:   3'- cUCGUUCCGCGuGGGGCUCAuGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.