miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24028 3' -57.9 NC_005262.1 + 48472 0.66 0.561296
Target:  5'- cAGCGAGGCGCGgucguaaCCCGAcugAUAGCc -3'
miRNA:   3'- cUCGUUCCGCGUg------GGGCUca-UGUCGu -5'
24028 3' -57.9 NC_005262.1 + 54203 0.66 0.570925
Target:  5'- aGGCGAGG-GCGCCgucgacgUCGAGgcGCAGCAg -3'
miRNA:   3'- cUCGUUCCgCGUGG-------GGCUCa-UGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 9798 0.66 0.571997
Target:  5'- -cGCGuauGGCGC-CCUCGGGUuuGGCGc -3'
miRNA:   3'- cuCGUu--CCGCGuGGGGCUCAugUCGU- -5'
24028 3' -57.9 NC_005262.1 + 4030 0.66 0.582747
Target:  5'- -uGCAcGGUGCugCCUGAGUAacaugacaaaAGCGa -3'
miRNA:   3'- cuCGUuCCGCGugGGGCUCAUg---------UCGU- -5'
24028 3' -57.9 NC_005262.1 + 18956 0.66 0.582747
Target:  5'- -cGCAAGGCGCugCuCCGGaUGC-GCu -3'
miRNA:   3'- cuCGUUCCGCGugG-GGCUcAUGuCGu -5'
24028 3' -57.9 NC_005262.1 + 17072 0.66 0.593537
Target:  5'- cGGCGccgauAGGCGCGCCCguCGAc-GCGGCGg -3'
miRNA:   3'- cUCGU-----UCCGCGUGGG--GCUcaUGUCGU- -5'
24028 3' -57.9 NC_005262.1 + 13033 0.66 0.593537
Target:  5'- aGGGCuacgcGGUGCGCgUCGAGcUGCGGCc -3'
miRNA:   3'- -CUCGuu---CCGCGUGgGGCUC-AUGUCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.