miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24028 5' -57.9 NC_005262.1 + 33328 0.66 0.628165
Target:  5'- aGCGCUcGACGuGCGCgUCGAUguugACGUc- -3'
miRNA:   3'- aCGCGAcCUGC-CGCG-AGCUG----UGCAag -5'
24028 5' -57.9 NC_005262.1 + 36277 0.66 0.628165
Target:  5'- aUGCG-UGGGC-GCGCggCGACGCGa-- -3'
miRNA:   3'- -ACGCgACCUGcCGCGa-GCUGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 53457 0.66 0.628165
Target:  5'- gGCGCcGGcgucgaggacaACGGCgugaagugGCUCGGCACGg-- -3'
miRNA:   3'- aCGCGaCC-----------UGCCG--------CGAGCUGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 12656 0.66 0.628165
Target:  5'- aGCGCgc-GCGGCGCgCGGCGaacccugcgccCGUUCu -3'
miRNA:   3'- aCGCGaccUGCCGCGaGCUGU-----------GCAAG- -5'
24028 5' -57.9 NC_005262.1 + 25334 0.66 0.628165
Target:  5'- gGCGCaGGAgcCGGCGUUgCG-CGCGgUUCg -3'
miRNA:   3'- aCGCGaCCU--GCCGCGA-GCuGUGC-AAG- -5'
24028 5' -57.9 NC_005262.1 + 29784 0.66 0.628165
Target:  5'- aGUGCcGGACGGCGC--GGCACc--- -3'
miRNA:   3'- aCGCGaCCUGCCGCGagCUGUGcaag -5'
24028 5' -57.9 NC_005262.1 + 14327 0.66 0.627092
Target:  5'- cGCcgaGCUGGGCGGCgaaguugcgacguGCUUGcGCGCGUc- -3'
miRNA:   3'- aCG---CGACCUGCCG-------------CGAGC-UGUGCAag -5'
24028 5' -57.9 NC_005262.1 + 41848 0.66 0.617441
Target:  5'- gUGCGCUGcGcCGGUGC-CGGCAU--UCu -3'
miRNA:   3'- -ACGCGAC-CuGCCGCGaGCUGUGcaAG- -5'
24028 5' -57.9 NC_005262.1 + 648 0.66 0.617441
Target:  5'- aGCgGUUGGGCGaGCGgUCGcGCACGa-- -3'
miRNA:   3'- aCG-CGACCUGC-CGCgAGC-UGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 34404 0.66 0.617441
Target:  5'- aGUGCaGGGCGGCGaC-CGuGC-CGUUCg -3'
miRNA:   3'- aCGCGaCCUGCCGC-GaGC-UGuGCAAG- -5'
24028 5' -57.9 NC_005262.1 + 30570 0.66 0.617441
Target:  5'- cUGaCGCaGGAuuuCGGCGCcgUCGAUguugGCGUUCu -3'
miRNA:   3'- -AC-GCGaCCU---GCCGCG--AGCUG----UGCAAG- -5'
24028 5' -57.9 NC_005262.1 + 33005 0.66 0.617441
Target:  5'- gGCGCUGGcgaGCGucGCGCgugCGACGCc--- -3'
miRNA:   3'- aCGCGACC---UGC--CGCGa--GCUGUGcaag -5'
24028 5' -57.9 NC_005262.1 + 61708 0.66 0.617441
Target:  5'- cGCGCcGGGuu-CGCUCGGCGCGcUCu -3'
miRNA:   3'- aCGCGaCCUgccGCGAGCUGUGCaAG- -5'
24028 5' -57.9 NC_005262.1 + 11420 0.66 0.616369
Target:  5'- cGCGCcGGGCcgccgaaGGUGCgCGACACGc-- -3'
miRNA:   3'- aCGCGaCCUG-------CCGCGaGCUGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 41302 0.66 0.616369
Target:  5'- cGUGCcGGcagucauACGGUGCUCGAaGCGgUCg -3'
miRNA:   3'- aCGCGaCC-------UGCCGCGAGCUgUGCaAG- -5'
24028 5' -57.9 NC_005262.1 + 55492 0.66 0.606729
Target:  5'- gGCGCUcGagcugcucgauGCGGCGCUCGaucugcuuGCGCGUg- -3'
miRNA:   3'- aCGCGAcC-----------UGCCGCGAGC--------UGUGCAag -5'
24028 5' -57.9 NC_005262.1 + 44947 0.66 0.596038
Target:  5'- aGCGCUGG-CGGUcCUCGcgggccCACGaUUCg -3'
miRNA:   3'- aCGCGACCuGCCGcGAGCu-----GUGC-AAG- -5'
24028 5' -57.9 NC_005262.1 + 22501 0.66 0.596038
Target:  5'- gGCGagcaGGCGGCGCUCGAUcaguGCGa-- -3'
miRNA:   3'- aCGCgac-CUGCCGCGAGCUG----UGCaag -5'
24028 5' -57.9 NC_005262.1 + 56338 0.66 0.596038
Target:  5'- aGCGuCUGGucgaggGCGGCGUgccccgCGAgcagauCGCGUUCa -3'
miRNA:   3'- aCGC-GACC------UGCCGCGa-----GCU------GUGCAAG- -5'
24028 5' -57.9 NC_005262.1 + 49287 0.66 0.596038
Target:  5'- aGUGCUGG-CGaCGUcCGAgGCGUUCc -3'
miRNA:   3'- aCGCGACCuGCcGCGaGCUgUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.