miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24028 5' -57.9 NC_005262.1 + 47322 0.66 0.585377
Target:  5'- --aGCUGGcgaccgauuCGGCGCUCGAgACGc-- -3'
miRNA:   3'- acgCGACCu--------GCCGCGAGCUgUGCaag -5'
24028 5' -57.9 NC_005262.1 + 53426 0.66 0.585377
Target:  5'- cGCGC-GGuCGGCGagguagCGGCGCGcgCg -3'
miRNA:   3'- aCGCGaCCuGCCGCga----GCUGUGCaaG- -5'
24028 5' -57.9 NC_005262.1 + 61158 0.66 0.585377
Target:  5'- cUGCGCcuucgucGACGGCGUaucCGGCACGaUCu -3'
miRNA:   3'- -ACGCGac-----CUGCCGCGa--GCUGUGCaAG- -5'
24028 5' -57.9 NC_005262.1 + 51850 0.66 0.585377
Target:  5'- aGUGCUGaagcGCGGCGCcgcgaaCGACGCGagCa -3'
miRNA:   3'- aCGCGACc---UGCCGCGa-----GCUGUGCaaG- -5'
24028 5' -57.9 NC_005262.1 + 17064 0.67 0.578997
Target:  5'- cGCGCgc-ACGGCGCcgauaggcgcgcccgUCGACGCGg-- -3'
miRNA:   3'- aCGCGaccUGCCGCG---------------AGCUGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 55020 0.67 0.574752
Target:  5'- cGCGCacgcGGuCGGCGCg-GGCaagACGUUCa -3'
miRNA:   3'- aCGCGa---CCuGCCGCGagCUG---UGCAAG- -5'
24028 5' -57.9 NC_005262.1 + 60946 0.67 0.574752
Target:  5'- gGCGCguacaacccGGACaGCgacaaucacucGCUCGAUGCGUUCc -3'
miRNA:   3'- aCGCGa--------CCUGcCG-----------CGAGCUGUGCAAG- -5'
24028 5' -57.9 NC_005262.1 + 34527 0.67 0.574752
Target:  5'- cGCgGCUG--UGGCGUUuugaCGACACGUUCc -3'
miRNA:   3'- aCG-CGACcuGCCGCGA----GCUGUGCAAG- -5'
24028 5' -57.9 NC_005262.1 + 56224 0.67 0.574752
Target:  5'- aGCuuGCUGuuCGGguCGCUCGGCGCGgUCg -3'
miRNA:   3'- aCG--CGACcuGCC--GCGAGCUGUGCaAG- -5'
24028 5' -57.9 NC_005262.1 + 46610 0.67 0.574752
Target:  5'- cGCGCUGGGCugcuGCGCg-GGCAgGggCg -3'
miRNA:   3'- aCGCGACCUGc---CGCGagCUGUgCaaG- -5'
24028 5' -57.9 NC_005262.1 + 48162 0.67 0.574752
Target:  5'- gGCGCcGGGCGGCuCgucgCGGCAgGUg- -3'
miRNA:   3'- aCGCGaCCUGCCGcGa---GCUGUgCAag -5'
24028 5' -57.9 NC_005262.1 + 19149 0.67 0.571573
Target:  5'- aGCGC-GG-CGGCGUcaagggccucgcaaUCGACAUGUg- -3'
miRNA:   3'- aCGCGaCCuGCCGCG--------------AGCUGUGCAag -5'
24028 5' -57.9 NC_005262.1 + 6639 0.67 0.564172
Target:  5'- aUGUGC-GG-CGGCGCUuCGAuCGCGUc- -3'
miRNA:   3'- -ACGCGaCCuGCCGCGA-GCU-GUGCAag -5'
24028 5' -57.9 NC_005262.1 + 38797 0.67 0.564172
Target:  5'- aUGCGCUGcACGGCGCgagcaacgGAUACGc-- -3'
miRNA:   3'- -ACGCGACcUGCCGCGag------CUGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 26250 0.67 0.564172
Target:  5'- cGCGCgccACucGUGCUCGACGCGUUg -3'
miRNA:   3'- aCGCGaccUGc-CGCGAGCUGUGCAAg -5'
24028 5' -57.9 NC_005262.1 + 16496 0.67 0.553644
Target:  5'- --aGCUGGGCgaGGCGCUgGGCGCu--- -3'
miRNA:   3'- acgCGACCUG--CCGCGAgCUGUGcaag -5'
24028 5' -57.9 NC_005262.1 + 35225 0.67 0.553644
Target:  5'- aUGCGgaGGucgGCGGCGCgaUCGGCAgCGg-- -3'
miRNA:   3'- -ACGCgaCC---UGCCGCG--AGCUGU-GCaag -5'
24028 5' -57.9 NC_005262.1 + 46710 0.67 0.543175
Target:  5'- cGCGCagUGGAcaagcCGGCGCaaucCGGCACGa-- -3'
miRNA:   3'- aCGCG--ACCU-----GCCGCGa---GCUGUGCaag -5'
24028 5' -57.9 NC_005262.1 + 23385 0.67 0.543175
Target:  5'- aUGCGCUuGAUGGCGaaCGACgggGCGggCg -3'
miRNA:   3'- -ACGCGAcCUGCCGCgaGCUG---UGCaaG- -5'
24028 5' -57.9 NC_005262.1 + 12192 0.67 0.543175
Target:  5'- cGCGCacGGCGGCGCUgauugcgccCGAaACGUUUg -3'
miRNA:   3'- aCGCGacCUGCCGCGA---------GCUgUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.