miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 3' -54.2 NC_005262.1 + 41116 0.66 0.793748
Target:  5'- cGAGAUCgUgcGCGUCAcGGCGCGCucGGAc -3'
miRNA:   3'- -CUUUAGgA--CGCAGU-CCGCGUGc-UCUa -5'
24029 3' -54.2 NC_005262.1 + 53458 0.66 0.793748
Target:  5'- ----gUCUGCGgCAGGCGCAUGGc-- -3'
miRNA:   3'- cuuuaGGACGCaGUCCGCGUGCUcua -5'
24029 3' -54.2 NC_005262.1 + 23567 0.66 0.783795
Target:  5'- ----cCCgccGCGcgCGGGCGCAgGAGAUc -3'
miRNA:   3'- cuuuaGGa--CGCa-GUCCGCGUgCUCUA- -5'
24029 3' -54.2 NC_005262.1 + 50937 0.66 0.773681
Target:  5'- ----aCCUGCGgCAuuucuGCGCGCGGGAUg -3'
miRNA:   3'- cuuuaGGACGCaGUc----CGCGUGCUCUA- -5'
24029 3' -54.2 NC_005262.1 + 36457 0.66 0.753013
Target:  5'- aGAAGUCUgGCGcaUgGGcGCGCGCGAGGc -3'
miRNA:   3'- -CUUUAGGaCGC--AgUC-CGCGUGCUCUa -5'
24029 3' -54.2 NC_005262.1 + 52046 0.67 0.73184
Target:  5'- ---uUCgaGCG-CAGGCGCGCGcGAg -3'
miRNA:   3'- cuuuAGgaCGCaGUCCGCGUGCuCUa -5'
24029 3' -54.2 NC_005262.1 + 43231 0.67 0.710257
Target:  5'- cGAAAUCCU-CGUguGGCGCuCGAa-- -3'
miRNA:   3'- -CUUUAGGAcGCAguCCGCGuGCUcua -5'
24029 3' -54.2 NC_005262.1 + 50412 0.68 0.677321
Target:  5'- --cGUCCUGCGcggCGGGCGCuGCGGc-- -3'
miRNA:   3'- cuuUAGGACGCa--GUCCGCG-UGCUcua -5'
24029 3' -54.2 NC_005262.1 + 57775 0.68 0.677321
Target:  5'- cGAAAgcaCCUugccGCGcCcGGCGCGCGAGAa -3'
miRNA:   3'- -CUUUa--GGA----CGCaGuCCGCGUGCUCUa -5'
24029 3' -54.2 NC_005262.1 + 10771 0.69 0.610552
Target:  5'- -uGAUCCgcccGCGcCGGGCGCGCGGu-- -3'
miRNA:   3'- cuUUAGGa---CGCaGUCCGCGUGCUcua -5'
24029 3' -54.2 NC_005262.1 + 33280 0.69 0.610552
Target:  5'- --cGUCCUGCGUC-GGCGCAaaguGGUa -3'
miRNA:   3'- cuuUAGGACGCAGuCCGCGUgcu-CUA- -5'
24029 3' -54.2 NC_005262.1 + 3686 0.69 0.576186
Target:  5'- ----gCCUGCucGUCaugauccGGGCGCACGAGGa -3'
miRNA:   3'- cuuuaGGACG--CAG-------UCCGCGUGCUCUa -5'
24029 3' -54.2 NC_005262.1 + 58642 0.7 0.533621
Target:  5'- -cAGUCgaGCGgcCGGGCGCGCGAGu- -3'
miRNA:   3'- cuUUAGgaCGCa-GUCCGCGUGCUCua -5'
24029 3' -54.2 NC_005262.1 + 3575 0.7 0.522879
Target:  5'- -cGAUCC-GCGUCGGGCGCGauccgcaaugggUGAGGg -3'
miRNA:   3'- cuUUAGGaCGCAGUCCGCGU------------GCUCUa -5'
24029 3' -54.2 NC_005262.1 + 16415 0.71 0.501655
Target:  5'- cGGGAUUCUGCGcCgcgAGGCGCAagGAGAUa -3'
miRNA:   3'- -CUUUAGGACGCaG---UCCGCGUg-CUCUA- -5'
24029 3' -54.2 NC_005262.1 + 13377 0.74 0.340345
Target:  5'- cGGAAUCCUGCGcCuGGGCGCGCGc--- -3'
miRNA:   3'- -CUUUAGGACGCaG-UCCGCGUGCucua -5'
24029 3' -54.2 NC_005262.1 + 30492 1.07 0.001887
Target:  5'- cGAAAUCCUGCGUCAGGCGCACGAGAUg -3'
miRNA:   3'- -CUUUAGGACGCAGUCCGCGUGCUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.