Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24029 | 3' | -54.2 | NC_005262.1 | + | 41116 | 0.66 | 0.793748 |
Target: 5'- cGAGAUCgUgcGCGUCAcGGCGCGCucGGAc -3' miRNA: 3'- -CUUUAGgA--CGCAGU-CCGCGUGc-UCUa -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 53458 | 0.66 | 0.793748 |
Target: 5'- ----gUCUGCGgCAGGCGCAUGGc-- -3' miRNA: 3'- cuuuaGGACGCaGUCCGCGUGCUcua -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 23567 | 0.66 | 0.783795 |
Target: 5'- ----cCCgccGCGcgCGGGCGCAgGAGAUc -3' miRNA: 3'- cuuuaGGa--CGCa-GUCCGCGUgCUCUA- -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 50937 | 0.66 | 0.773681 |
Target: 5'- ----aCCUGCGgCAuuucuGCGCGCGGGAUg -3' miRNA: 3'- cuuuaGGACGCaGUc----CGCGUGCUCUA- -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 36457 | 0.66 | 0.753013 |
Target: 5'- aGAAGUCUgGCGcaUgGGcGCGCGCGAGGc -3' miRNA: 3'- -CUUUAGGaCGC--AgUC-CGCGUGCUCUa -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 52046 | 0.67 | 0.73184 |
Target: 5'- ---uUCgaGCG-CAGGCGCGCGcGAg -3' miRNA: 3'- cuuuAGgaCGCaGUCCGCGUGCuCUa -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 43231 | 0.67 | 0.710257 |
Target: 5'- cGAAAUCCU-CGUguGGCGCuCGAa-- -3' miRNA: 3'- -CUUUAGGAcGCAguCCGCGuGCUcua -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 50412 | 0.68 | 0.677321 |
Target: 5'- --cGUCCUGCGcggCGGGCGCuGCGGc-- -3' miRNA: 3'- cuuUAGGACGCa--GUCCGCG-UGCUcua -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 57775 | 0.68 | 0.677321 |
Target: 5'- cGAAAgcaCCUugccGCGcCcGGCGCGCGAGAa -3' miRNA: 3'- -CUUUa--GGA----CGCaGuCCGCGUGCUCUa -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 10771 | 0.69 | 0.610552 |
Target: 5'- -uGAUCCgcccGCGcCGGGCGCGCGGu-- -3' miRNA: 3'- cuUUAGGa---CGCaGUCCGCGUGCUcua -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 33280 | 0.69 | 0.610552 |
Target: 5'- --cGUCCUGCGUC-GGCGCAaaguGGUa -3' miRNA: 3'- cuuUAGGACGCAGuCCGCGUgcu-CUA- -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 3686 | 0.69 | 0.576186 |
Target: 5'- ----gCCUGCucGUCaugauccGGGCGCACGAGGa -3' miRNA: 3'- cuuuaGGACG--CAG-------UCCGCGUGCUCUa -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 58642 | 0.7 | 0.533621 |
Target: 5'- -cAGUCgaGCGgcCGGGCGCGCGAGu- -3' miRNA: 3'- cuUUAGgaCGCa-GUCCGCGUGCUCua -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 3575 | 0.7 | 0.522879 |
Target: 5'- -cGAUCC-GCGUCGGGCGCGauccgcaaugggUGAGGg -3' miRNA: 3'- cuUUAGGaCGCAGUCCGCGU------------GCUCUa -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 16415 | 0.71 | 0.501655 |
Target: 5'- cGGGAUUCUGCGcCgcgAGGCGCAagGAGAUa -3' miRNA: 3'- -CUUUAGGACGCaG---UCCGCGUg-CUCUA- -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 13377 | 0.74 | 0.340345 |
Target: 5'- cGGAAUCCUGCGcCuGGGCGCGCGc--- -3' miRNA: 3'- -CUUUAGGACGCaG-UCCGCGUGCucua -5' |
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24029 | 3' | -54.2 | NC_005262.1 | + | 30492 | 1.07 | 0.001887 |
Target: 5'- cGAAAUCCUGCGUCAGGCGCACGAGAUg -3' miRNA: 3'- -CUUUAGGACGCAGUCCGCGUGCUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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