miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 39138 0.66 0.760978
Target:  5'- uCGuCUuguUGGGCGuGGUGGCGCCGuuaccgauGAGGa -3'
miRNA:   3'- -GCuGG---ACCCGCuUCGUUGCGGC--------UUCC- -5'
24029 5' -56 NC_005262.1 + 16473 0.66 0.754961
Target:  5'- cCGGCCgGGGCGgguucaaaAcugguugccgaacgcGGCGGCGCCGAu-- -3'
miRNA:   3'- -GCUGGaCCCGC--------U---------------UCGUUGCGGCUucc -5'
24029 5' -56 NC_005262.1 + 60836 0.66 0.750927
Target:  5'- cCGGCCUacgcgaucGGCGuGGCgAugGCCGAGGc -3'
miRNA:   3'- -GCUGGAc-------CCGCuUCG-UugCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 53461 0.66 0.750927
Target:  5'- gCGGUCUGcGGCaGgcGCAugGCGCCGAucAGGu -3'
miRNA:   3'- -GCUGGAC-CCG-CuuCGU--UGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 6387 0.66 0.750927
Target:  5'- gCGGCC--GGCGAGcGCAagaagGCGgCGAAGGc -3'
miRNA:   3'- -GCUGGacCCGCUU-CGU-----UGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 55055 0.66 0.750927
Target:  5'- uGAUCgcgacGGGCauGGAGgAGCGCCGGcuGGGc -3'
miRNA:   3'- gCUGGa----CCCG--CUUCgUUGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 13003 0.66 0.750927
Target:  5'- uGACgUGGGUguacgcgcaGGAGCG-CGCC-AAGGg -3'
miRNA:   3'- gCUGgACCCG---------CUUCGUuGCGGcUUCC- -5'
24029 5' -56 NC_005262.1 + 48999 0.66 0.749915
Target:  5'- aGACUggUGGaacaGCGAaaagggaacguucGGCGACGCCugGAAGGa -3'
miRNA:   3'- gCUGG--ACC----CGCU-------------UCGUUGCGG--CUUCC- -5'
24029 5' -56 NC_005262.1 + 55428 0.66 0.740761
Target:  5'- cCGGCUgGaGGCGAaacagGGCAGCGagaaGAAGGa -3'
miRNA:   3'- -GCUGGaC-CCGCU-----UCGUUGCgg--CUUCC- -5'
24029 5' -56 NC_005262.1 + 57477 0.66 0.740761
Target:  5'- aGGuCgaGGGCGAgaAGCcggccgacgaGGCGCCGAAGu -3'
miRNA:   3'- gCU-GgaCCCGCU--UCG----------UUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 63410 0.66 0.740761
Target:  5'- uGACCUcGGCGAcGCGGCGCgCGu--- -3'
miRNA:   3'- gCUGGAcCCGCUuCGUUGCG-GCuucc -5'
24029 5' -56 NC_005262.1 + 18019 0.66 0.73049
Target:  5'- gCGACCUGcucgccguuGGCGu--CGGCGCCGAucGGc -3'
miRNA:   3'- -GCUGGAC---------CCGCuucGUUGCGGCUu-CC- -5'
24029 5' -56 NC_005262.1 + 27541 0.66 0.720126
Target:  5'- cCGACgaGGGCGAGcuCAGCcCCGGcgAGGa -3'
miRNA:   3'- -GCUGgaCCCGCUUc-GUUGcGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 49883 0.66 0.720126
Target:  5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3'
miRNA:   3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 26882 0.66 0.720126
Target:  5'- aGGCC-GGGCGccucAAGCGAauccgccaugUGCCGAAGc -3'
miRNA:   3'- gCUGGaCCCGC----UUCGUU----------GCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 59095 0.66 0.709679
Target:  5'- gCGGCUUGcagacGGuCGAAGCGcgacgGCGCgGGAGGc -3'
miRNA:   3'- -GCUGGAC-----CC-GCUUCGU-----UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 55938 0.67 0.703375
Target:  5'- gCGAUCgaGGGCGGcggccgucagaucauGGUcACGCCGGAGc -3'
miRNA:   3'- -GCUGGa-CCCGCU---------------UCGuUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 2523 0.67 0.699159
Target:  5'- aGACC--GGCGAguGGCAGgcaGCCGAGGa -3'
miRNA:   3'- gCUGGacCCGCU--UCGUUg--CGGCUUCc -5'
24029 5' -56 NC_005262.1 + 35050 0.67 0.699159
Target:  5'- uCGACUUGcGGCcGAGCGccGCGUCGAAc- -3'
miRNA:   3'- -GCUGGAC-CCGcUUCGU--UGCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 5114 0.67 0.688577
Target:  5'- cCGGCC--GGCG-AGCAAcugcCGCUGGAGGc -3'
miRNA:   3'- -GCUGGacCCGCuUCGUU----GCGGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.