Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24029 | 5' | -56 | NC_005262.1 | + | 5114 | 0.67 | 0.688577 |
Target: 5'- cCGGCC--GGCG-AGCAAcugcCGCUGGAGGc -3' miRNA: 3'- -GCUGGacCCGCuUCGUU----GCGGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 34883 | 0.67 | 0.674746 |
Target: 5'- aCGGCUUGaGGCGAAGCcAcaccuucaccgaucCGCCGAGc- -3' miRNA: 3'- -GCUGGAC-CCGCUUCGuU--------------GCGGCUUcc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 55304 | 0.67 | 0.667269 |
Target: 5'- gCGGCCUGcGCGAcgaAGCGACGgCGGu-- -3' miRNA: 3'- -GCUGGACcCGCU---UCGUUGCgGCUucc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 31639 | 0.68 | 0.624354 |
Target: 5'- cCGACCUacGGCGAuGCccGCGUgGAAGGu -3' miRNA: 3'- -GCUGGAc-CCGCUuCGu-UGCGgCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 33469 | 0.68 | 0.623279 |
Target: 5'- uGAgCUGGGCGgcGuCGACgaucacgGCCGgcGGg -3' miRNA: 3'- gCUgGACCCGCuuC-GUUG-------CGGCuuCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 43868 | 0.68 | 0.592201 |
Target: 5'- gGACCUcGGcGCGAucgcgcGCAugGCCGAcaugaagucgaAGGc -3' miRNA: 3'- gCUGGA-CC-CGCUu-----CGUugCGGCU-----------UCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 61606 | 0.68 | 0.613618 |
Target: 5'- uCGACCga-GCaGAAGCGcgcGCGCCuGAAGGa -3' miRNA: 3'- -GCUGGaccCG-CUUCGU---UGCGG-CUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 5176 | 0.68 | 0.592201 |
Target: 5'- aCGGCCggcgucgcGGGCGcGGGCGcggccggcGCGaCCGAGGGc -3' miRNA: 3'- -GCUGGa-------CCCGC-UUCGU--------UGC-GGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 59500 | 0.68 | 0.624354 |
Target: 5'- aCGuGCCgcugaaGGGCGAcggcgAGUAugGCCcGAAGGu -3' miRNA: 3'- -GC-UGGa-----CCCGCU-----UCGUugCGG-CUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 31081 | 0.68 | 0.635096 |
Target: 5'- cCGACCUgaaGGGCGAGccGCGGC-CCGAc-- -3' miRNA: 3'- -GCUGGA---CCCGCUU--CGUUGcGGCUucc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 49223 | 0.68 | 0.645835 |
Target: 5'- gCGGCCUcGGCGgcGCGcaguccGCGCgCGAGGu -3' miRNA: 3'- -GCUGGAcCCGCuuCGU------UGCG-GCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 12908 | 0.69 | 0.569852 |
Target: 5'- cCGGCCUGcuGGaCGAcgacaaccugcgcGGC-GCGCUGAAGGg -3' miRNA: 3'- -GCUGGAC--CC-GCU-------------UCGuUGCGGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 50804 | 0.69 | 0.581537 |
Target: 5'- -cGCCgaGGGCauGGAGCGcuucGCGCCGGAGa -3' miRNA: 3'- gcUGGa-CCCG--CUUCGU----UGCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 54203 | 0.69 | 0.539354 |
Target: 5'- aGGCgaGGGCGccGuCGACGUCGAGGc -3' miRNA: 3'- gCUGgaCCCGCuuC-GUUGCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 37716 | 0.69 | 0.581537 |
Target: 5'- gCGugCagaugGGGCGugaaGGGCugcGCGUCGAAGGg -3' miRNA: 3'- -GCugGa----CCCGC----UUCGu--UGCGGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 60212 | 0.69 | 0.560336 |
Target: 5'- cCGGCC--GGCGAggucGGCAAgcUGCUGAAGGa -3' miRNA: 3'- -GCUGGacCCGCU----UCGUU--GCGGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 60147 | 0.7 | 0.528962 |
Target: 5'- aGGCaUGGGCGAAGUAcccggcCGCCGugAAGGc -3' miRNA: 3'- gCUGgACCCGCUUCGUu-----GCGGC--UUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 25458 | 0.7 | 0.502309 |
Target: 5'- aGGCgCUGcGCGAGGCGAUGCCGcucgccaacugcacgAAGGc -3' miRNA: 3'- gCUG-GACcCGCUUCGUUGCGGC---------------UUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 46980 | 0.71 | 0.448019 |
Target: 5'- uCGGCCUguGGGCGAAggcauggcgcGCGACGCagaugggcgacauCGAGGGc -3' miRNA: 3'- -GCUGGA--CCCGCUU----------CGUUGCG-------------GCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 47619 | 0.71 | 0.468378 |
Target: 5'- aCGAUCcGGGCuucucGCGGCuGCCGGAGGa -3' miRNA: 3'- -GCUGGaCCCGcuu--CGUUG-CGGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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