miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 5176 0.68 0.592201
Target:  5'- aCGGCCggcgucgcGGGCGcGGGCGcggccggcGCGaCCGAGGGc -3'
miRNA:   3'- -GCUGGa-------CCCGC-UUCGU--------UGC-GGCUUCC- -5'
24029 5' -56 NC_005262.1 + 61606 0.68 0.613618
Target:  5'- uCGACCga-GCaGAAGCGcgcGCGCCuGAAGGa -3'
miRNA:   3'- -GCUGGaccCG-CUUCGU---UGCGG-CUUCC- -5'
24029 5' -56 NC_005262.1 + 33469 0.68 0.623279
Target:  5'- uGAgCUGGGCGgcGuCGACgaucacgGCCGgcGGg -3'
miRNA:   3'- gCUgGACCCGCuuC-GUUG-------CGGCuuCC- -5'
24029 5' -56 NC_005262.1 + 31639 0.68 0.624354
Target:  5'- cCGACCUacGGCGAuGCccGCGUgGAAGGu -3'
miRNA:   3'- -GCUGGAc-CCGCUuCGu-UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 59500 0.68 0.624354
Target:  5'- aCGuGCCgcugaaGGGCGAcggcgAGUAugGCCcGAAGGu -3'
miRNA:   3'- -GC-UGGa-----CCCGCU-----UCGUugCGG-CUUCC- -5'
24029 5' -56 NC_005262.1 + 31081 0.68 0.635096
Target:  5'- cCGACCUgaaGGGCGAGccGCGGC-CCGAc-- -3'
miRNA:   3'- -GCUGGA---CCCGCUU--CGUUGcGGCUucc -5'
24029 5' -56 NC_005262.1 + 49223 0.68 0.645835
Target:  5'- gCGGCCUcGGCGgcGCGcaguccGCGCgCGAGGu -3'
miRNA:   3'- -GCUGGAcCCGCuuCGU------UGCG-GCUUCc -5'
24029 5' -56 NC_005262.1 + 43128 0.67 0.66406
Target:  5'- cCGGCCgggucGauguacucguagcuGGCGAGGUAGCGgCCGAAGa -3'
miRNA:   3'- -GCUGGa----C--------------CCGCUUCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 55304 0.67 0.667269
Target:  5'- gCGGCCUGcGCGAcgaAGCGACGgCGGu-- -3'
miRNA:   3'- -GCUGGACcCGCU---UCGUUGCgGCUucc -5'
24029 5' -56 NC_005262.1 + 34883 0.67 0.674746
Target:  5'- aCGGCUUGaGGCGAAGCcAcaccuucaccgaucCGCCGAGc- -3'
miRNA:   3'- -GCUGGAC-CCGCUUCGuU--------------GCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 5114 0.67 0.688577
Target:  5'- cCGGCC--GGCG-AGCAAcugcCGCUGGAGGc -3'
miRNA:   3'- -GCUGGacCCGCuUCGUU----GCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 35050 0.67 0.699159
Target:  5'- uCGACUUGcGGCcGAGCGccGCGUCGAAc- -3'
miRNA:   3'- -GCUGGAC-CCGcUUCGU--UGCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 2523 0.67 0.699159
Target:  5'- aGACC--GGCGAguGGCAGgcaGCCGAGGa -3'
miRNA:   3'- gCUGGacCCGCU--UCGUUg--CGGCUUCc -5'
24029 5' -56 NC_005262.1 + 55938 0.67 0.703375
Target:  5'- gCGAUCgaGGGCGGcggccgucagaucauGGUcACGCCGGAGc -3'
miRNA:   3'- -GCUGGa-CCCGCU---------------UCGuUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 59095 0.66 0.709679
Target:  5'- gCGGCUUGcagacGGuCGAAGCGcgacgGCGCgGGAGGc -3'
miRNA:   3'- -GCUGGAC-----CC-GCUUCGU-----UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 27541 0.66 0.720126
Target:  5'- cCGACgaGGGCGAGcuCAGCcCCGGcgAGGa -3'
miRNA:   3'- -GCUGgaCCCGCUUc-GUUGcGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 26882 0.66 0.720126
Target:  5'- aGGCC-GGGCGccucAAGCGAauccgccaugUGCCGAAGc -3'
miRNA:   3'- gCUGGaCCCGC----UUCGUU----------GCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 49883 0.66 0.720126
Target:  5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3'
miRNA:   3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 18019 0.66 0.73049
Target:  5'- gCGACCUGcucgccguuGGCGu--CGGCGCCGAucGGc -3'
miRNA:   3'- -GCUGGAC---------CCGCuucGUUGCGGCUu-CC- -5'
24029 5' -56 NC_005262.1 + 55428 0.66 0.740761
Target:  5'- cCGGCUgGaGGCGAaacagGGCAGCGagaaGAAGGa -3'
miRNA:   3'- -GCUGGaC-CCGCU-----UCGUUGCgg--CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.