Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24029 | 5' | -56 | NC_005262.1 | + | 39138 | 0.66 | 0.760978 |
Target: 5'- uCGuCUuguUGGGCGuGGUGGCGCCGuuaccgauGAGGa -3' miRNA: 3'- -GCuGG---ACCCGCuUCGUUGCGGC--------UUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 16473 | 0.66 | 0.754961 |
Target: 5'- cCGGCCgGGGCGgguucaaaAcugguugccgaacgcGGCGGCGCCGAu-- -3' miRNA: 3'- -GCUGGaCCCGC--------U---------------UCGUUGCGGCUucc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 60836 | 0.66 | 0.750927 |
Target: 5'- cCGGCCUacgcgaucGGCGuGGCgAugGCCGAGGc -3' miRNA: 3'- -GCUGGAc-------CCGCuUCG-UugCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 53461 | 0.66 | 0.750927 |
Target: 5'- gCGGUCUGcGGCaGgcGCAugGCGCCGAucAGGu -3' miRNA: 3'- -GCUGGAC-CCG-CuuCGU--UGCGGCU--UCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 6387 | 0.66 | 0.750927 |
Target: 5'- gCGGCC--GGCGAGcGCAagaagGCGgCGAAGGc -3' miRNA: 3'- -GCUGGacCCGCUU-CGU-----UGCgGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 55055 | 0.66 | 0.750927 |
Target: 5'- uGAUCgcgacGGGCauGGAGgAGCGCCGGcuGGGc -3' miRNA: 3'- gCUGGa----CCCG--CUUCgUUGCGGCU--UCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 13003 | 0.66 | 0.750927 |
Target: 5'- uGACgUGGGUguacgcgcaGGAGCG-CGCC-AAGGg -3' miRNA: 3'- gCUGgACCCG---------CUUCGUuGCGGcUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 48999 | 0.66 | 0.749915 |
Target: 5'- aGACUggUGGaacaGCGAaaagggaacguucGGCGACGCCugGAAGGa -3' miRNA: 3'- gCUGG--ACC----CGCU-------------UCGUUGCGG--CUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 55428 | 0.66 | 0.740761 |
Target: 5'- cCGGCUgGaGGCGAaacagGGCAGCGagaaGAAGGa -3' miRNA: 3'- -GCUGGaC-CCGCU-----UCGUUGCgg--CUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 57477 | 0.66 | 0.740761 |
Target: 5'- aGGuCgaGGGCGAgaAGCcggccgacgaGGCGCCGAAGu -3' miRNA: 3'- gCU-GgaCCCGCU--UCG----------UUGCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 63410 | 0.66 | 0.740761 |
Target: 5'- uGACCUcGGCGAcGCGGCGCgCGu--- -3' miRNA: 3'- gCUGGAcCCGCUuCGUUGCG-GCuucc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 18019 | 0.66 | 0.73049 |
Target: 5'- gCGACCUGcucgccguuGGCGu--CGGCGCCGAucGGc -3' miRNA: 3'- -GCUGGAC---------CCGCuucGUUGCGGCUu-CC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 27541 | 0.66 | 0.720126 |
Target: 5'- cCGACgaGGGCGAGcuCAGCcCCGGcgAGGa -3' miRNA: 3'- -GCUGgaCCCGCUUc-GUUGcGGCU--UCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 49883 | 0.66 | 0.720126 |
Target: 5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3' miRNA: 3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 26882 | 0.66 | 0.720126 |
Target: 5'- aGGCC-GGGCGccucAAGCGAauccgccaugUGCCGAAGc -3' miRNA: 3'- gCUGGaCCCGC----UUCGUU----------GCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 59095 | 0.66 | 0.709679 |
Target: 5'- gCGGCUUGcagacGGuCGAAGCGcgacgGCGCgGGAGGc -3' miRNA: 3'- -GCUGGAC-----CC-GCUUCGU-----UGCGgCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 55938 | 0.67 | 0.703375 |
Target: 5'- gCGAUCgaGGGCGGcggccgucagaucauGGUcACGCCGGAGc -3' miRNA: 3'- -GCUGGa-CCCGCU---------------UCGuUGCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 2523 | 0.67 | 0.699159 |
Target: 5'- aGACC--GGCGAguGGCAGgcaGCCGAGGa -3' miRNA: 3'- gCUGGacCCGCU--UCGUUg--CGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 35050 | 0.67 | 0.699159 |
Target: 5'- uCGACUUGcGGCcGAGCGccGCGUCGAAc- -3' miRNA: 3'- -GCUGGAC-CCGcUUCGU--UGCGGCUUcc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 5114 | 0.67 | 0.688577 |
Target: 5'- cCGGCC--GGCG-AGCAAcugcCGCUGGAGGc -3' miRNA: 3'- -GCUGGacCCGCuUCGUU----GCGGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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