miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 34883 0.67 0.674746
Target:  5'- aCGGCUUGaGGCGAAGCcAcaccuucaccgaucCGCCGAGc- -3'
miRNA:   3'- -GCUGGAC-CCGCUUCGuU--------------GCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 55304 0.67 0.667269
Target:  5'- gCGGCCUGcGCGAcgaAGCGACGgCGGu-- -3'
miRNA:   3'- -GCUGGACcCGCU---UCGUUGCgGCUucc -5'
24029 5' -56 NC_005262.1 + 43128 0.67 0.66406
Target:  5'- cCGGCCgggucGauguacucguagcuGGCGAGGUAGCGgCCGAAGa -3'
miRNA:   3'- -GCUGGa----C--------------CCGCUUCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 49223 0.68 0.645835
Target:  5'- gCGGCCUcGGCGgcGCGcaguccGCGCgCGAGGu -3'
miRNA:   3'- -GCUGGAcCCGCuuCGU------UGCG-GCUUCc -5'
24029 5' -56 NC_005262.1 + 31081 0.68 0.635096
Target:  5'- cCGACCUgaaGGGCGAGccGCGGC-CCGAc-- -3'
miRNA:   3'- -GCUGGA---CCCGCUU--CGUUGcGGCUucc -5'
24029 5' -56 NC_005262.1 + 59500 0.68 0.624354
Target:  5'- aCGuGCCgcugaaGGGCGAcggcgAGUAugGCCcGAAGGu -3'
miRNA:   3'- -GC-UGGa-----CCCGCU-----UCGUugCGG-CUUCC- -5'
24029 5' -56 NC_005262.1 + 31639 0.68 0.624354
Target:  5'- cCGACCUacGGCGAuGCccGCGUgGAAGGu -3'
miRNA:   3'- -GCUGGAc-CCGCUuCGu-UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 33469 0.68 0.623279
Target:  5'- uGAgCUGGGCGgcGuCGACgaucacgGCCGgcGGg -3'
miRNA:   3'- gCUgGACCCGCuuC-GUUG-------CGGCuuCC- -5'
24029 5' -56 NC_005262.1 + 61606 0.68 0.613618
Target:  5'- uCGACCga-GCaGAAGCGcgcGCGCCuGAAGGa -3'
miRNA:   3'- -GCUGGaccCG-CUUCGU---UGCGG-CUUCC- -5'
24029 5' -56 NC_005262.1 + 43868 0.68 0.592201
Target:  5'- gGACCUcGGcGCGAucgcgcGCAugGCCGAcaugaagucgaAGGc -3'
miRNA:   3'- gCUGGA-CC-CGCUu-----CGUugCGGCU-----------UCC- -5'
24029 5' -56 NC_005262.1 + 5176 0.68 0.592201
Target:  5'- aCGGCCggcgucgcGGGCGcGGGCGcggccggcGCGaCCGAGGGc -3'
miRNA:   3'- -GCUGGa-------CCCGC-UUCGU--------UGC-GGCUUCC- -5'
24029 5' -56 NC_005262.1 + 50804 0.69 0.581537
Target:  5'- -cGCCgaGGGCauGGAGCGcuucGCGCCGGAGa -3'
miRNA:   3'- gcUGGa-CCCG--CUUCGU----UGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 37716 0.69 0.581537
Target:  5'- gCGugCagaugGGGCGugaaGGGCugcGCGUCGAAGGg -3'
miRNA:   3'- -GCugGa----CCCGC----UUCGu--UGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 12908 0.69 0.569852
Target:  5'- cCGGCCUGcuGGaCGAcgacaaccugcgcGGC-GCGCUGAAGGg -3'
miRNA:   3'- -GCUGGAC--CC-GCU-------------UCGuUGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 60212 0.69 0.560336
Target:  5'- cCGGCC--GGCGAggucGGCAAgcUGCUGAAGGa -3'
miRNA:   3'- -GCUGGacCCGCU----UCGUU--GCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 54203 0.69 0.539354
Target:  5'- aGGCgaGGGCGccGuCGACGUCGAGGc -3'
miRNA:   3'- gCUGgaCCCGCuuC-GUUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 60147 0.7 0.528962
Target:  5'- aGGCaUGGGCGAAGUAcccggcCGCCGugAAGGc -3'
miRNA:   3'- gCUGgACCCGCUUCGUu-----GCGGC--UUCC- -5'
24029 5' -56 NC_005262.1 + 25458 0.7 0.502309
Target:  5'- aGGCgCUGcGCGAGGCGAUGCCGcucgccaacugcacgAAGGc -3'
miRNA:   3'- gCUG-GACcCGCUUCGUUGCGGC---------------UUCC- -5'
24029 5' -56 NC_005262.1 + 47619 0.71 0.468378
Target:  5'- aCGAUCcGGGCuucucGCGGCuGCCGGAGGa -3'
miRNA:   3'- -GCUGGaCCCGcuu--CGUUG-CGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 46980 0.71 0.448019
Target:  5'- uCGGCCUguGGGCGAAggcauggcgcGCGACGCagaugggcgacauCGAGGGc -3'
miRNA:   3'- -GCUGGA--CCCGCUU----------CGUUGCG-------------GCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.