Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24029 | 5' | -56 | NC_005262.1 | + | 29948 | 0.71 | 0.430029 |
Target: 5'- aCGACCcGGacGCG-GGCGGCGgCGAAGGu -3' miRNA: 3'- -GCUGGaCC--CGCuUCGUUGCgGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 23354 | 0.71 | 0.430029 |
Target: 5'- aCGGCC-GGcGUGAAGCGcgcgGCGgCGAAGGc -3' miRNA: 3'- -GCUGGaCC-CGCUUCGU----UGCgGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 42172 | 0.72 | 0.402508 |
Target: 5'- cCGAUCgucuguacgugaUGGGCGAcGGC-GCGCCGAAGa -3' miRNA: 3'- -GCUGG------------ACCCGCU-UCGuUGCGGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 61403 | 0.72 | 0.40161 |
Target: 5'- aCGACCUcgcgcgcGaGGCGAAgGCGGCGgCCGAGGa -3' miRNA: 3'- -GCUGGA-------C-CCGCUU-CGUUGC-GGCUUCc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 35929 | 0.74 | 0.304254 |
Target: 5'- -cAUCUGGGCGGucGCGGCGCCGAc-- -3' miRNA: 3'- gcUGGACCCGCUu-CGUUGCGGCUucc -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 23477 | 0.74 | 0.304254 |
Target: 5'- aCGAauggCUGGGCGAGGUucgcccgcuGACGCCcGAGGa -3' miRNA: 3'- -GCUg---GACCCGCUUCG---------UUGCGGcUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 989 | 0.75 | 0.269107 |
Target: 5'- gCGACCUgcgGGGCGggGCGGuguagagcuuguCGCCGAucuugAGGc -3' miRNA: 3'- -GCUGGA---CCCGCuuCGUU------------GCGGCU-----UCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 33731 | 0.79 | 0.140208 |
Target: 5'- aGACgCUGaaGGCGAAGCu-CGCCGAAGGc -3' miRNA: 3'- gCUG-GAC--CCGCUUCGuuGCGGCUUCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 16493 | 0.8 | 0.129245 |
Target: 5'- aCGAgCUGGGCGAGGCGcuggGCGCUGcgcuGGGg -3' miRNA: 3'- -GCUgGACCCGCUUCGU----UGCGGCu---UCC- -5' |
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24029 | 5' | -56 | NC_005262.1 | + | 30527 | 1.1 | 0.001024 |
Target: 5'- cCGACCUGGGCGAAGCAACGCCGAAGGc -3' miRNA: 3'- -GCUGGACCCGCUUCGUUGCGGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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