miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 989 0.75 0.269107
Target:  5'- gCGACCUgcgGGGCGggGCGGuguagagcuuguCGCCGAucuugAGGc -3'
miRNA:   3'- -GCUGGA---CCCGCuuCGUU------------GCGGCU-----UCC- -5'
24029 5' -56 NC_005262.1 + 2523 0.67 0.699159
Target:  5'- aGACC--GGCGAguGGCAGgcaGCCGAGGa -3'
miRNA:   3'- gCUGGacCCGCU--UCGUUg--CGGCUUCc -5'
24029 5' -56 NC_005262.1 + 5114 0.67 0.688577
Target:  5'- cCGGCC--GGCG-AGCAAcugcCGCUGGAGGc -3'
miRNA:   3'- -GCUGGacCCGCuUCGUU----GCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 5176 0.68 0.592201
Target:  5'- aCGGCCggcgucgcGGGCGcGGGCGcggccggcGCGaCCGAGGGc -3'
miRNA:   3'- -GCUGGa-------CCCGC-UUCGU--------UGC-GGCUUCC- -5'
24029 5' -56 NC_005262.1 + 6387 0.66 0.750927
Target:  5'- gCGGCC--GGCGAGcGCAagaagGCGgCGAAGGc -3'
miRNA:   3'- -GCUGGacCCGCUU-CGU-----UGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 12908 0.69 0.569852
Target:  5'- cCGGCCUGcuGGaCGAcgacaaccugcgcGGC-GCGCUGAAGGg -3'
miRNA:   3'- -GCUGGAC--CC-GCU-------------UCGuUGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 13003 0.66 0.750927
Target:  5'- uGACgUGGGUguacgcgcaGGAGCG-CGCC-AAGGg -3'
miRNA:   3'- gCUGgACCCG---------CUUCGUuGCGGcUUCC- -5'
24029 5' -56 NC_005262.1 + 16473 0.66 0.754961
Target:  5'- cCGGCCgGGGCGgguucaaaAcugguugccgaacgcGGCGGCGCCGAu-- -3'
miRNA:   3'- -GCUGGaCCCGC--------U---------------UCGUUGCGGCUucc -5'
24029 5' -56 NC_005262.1 + 16493 0.8 0.129245
Target:  5'- aCGAgCUGGGCGAGGCGcuggGCGCUGcgcuGGGg -3'
miRNA:   3'- -GCUgGACCCGCUUCGU----UGCGGCu---UCC- -5'
24029 5' -56 NC_005262.1 + 18019 0.66 0.73049
Target:  5'- gCGACCUGcucgccguuGGCGu--CGGCGCCGAucGGc -3'
miRNA:   3'- -GCUGGAC---------CCGCuucGUUGCGGCUu-CC- -5'
24029 5' -56 NC_005262.1 + 23354 0.71 0.430029
Target:  5'- aCGGCC-GGcGUGAAGCGcgcgGCGgCGAAGGc -3'
miRNA:   3'- -GCUGGaCC-CGCUUCGU----UGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 23477 0.74 0.304254
Target:  5'- aCGAauggCUGGGCGAGGUucgcccgcuGACGCCcGAGGa -3'
miRNA:   3'- -GCUg---GACCCGCUUCG---------UUGCGGcUUCC- -5'
24029 5' -56 NC_005262.1 + 25458 0.7 0.502309
Target:  5'- aGGCgCUGcGCGAGGCGAUGCCGcucgccaacugcacgAAGGc -3'
miRNA:   3'- gCUG-GACcCGCUUCGUUGCGGC---------------UUCC- -5'
24029 5' -56 NC_005262.1 + 26882 0.66 0.720126
Target:  5'- aGGCC-GGGCGccucAAGCGAauccgccaugUGCCGAAGc -3'
miRNA:   3'- gCUGGaCCCGC----UUCGUU----------GCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 27541 0.66 0.720126
Target:  5'- cCGACgaGGGCGAGcuCAGCcCCGGcgAGGa -3'
miRNA:   3'- -GCUGgaCCCGCUUc-GUUGcGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 29948 0.71 0.430029
Target:  5'- aCGACCcGGacGCG-GGCGGCGgCGAAGGu -3'
miRNA:   3'- -GCUGGaCC--CGCuUCGUUGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 30527 1.1 0.001024
Target:  5'- cCGACCUGGGCGAAGCAACGCCGAAGGc -3'
miRNA:   3'- -GCUGGACCCGCUUCGUUGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 31081 0.68 0.635096
Target:  5'- cCGACCUgaaGGGCGAGccGCGGC-CCGAc-- -3'
miRNA:   3'- -GCUGGA---CCCGCUU--CGUUGcGGCUucc -5'
24029 5' -56 NC_005262.1 + 31639 0.68 0.624354
Target:  5'- cCGACCUacGGCGAuGCccGCGUgGAAGGu -3'
miRNA:   3'- -GCUGGAc-CCGCUuCGu-UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 33469 0.68 0.623279
Target:  5'- uGAgCUGGGCGgcGuCGACgaucacgGCCGgcGGg -3'
miRNA:   3'- gCUgGACCCGCuuC-GUUG-------CGGCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.