miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 33731 0.79 0.140208
Target:  5'- aGACgCUGaaGGCGAAGCu-CGCCGAAGGc -3'
miRNA:   3'- gCUG-GAC--CCGCUUCGuuGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 34883 0.67 0.674746
Target:  5'- aCGGCUUGaGGCGAAGCcAcaccuucaccgaucCGCCGAGc- -3'
miRNA:   3'- -GCUGGAC-CCGCUUCGuU--------------GCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 35050 0.67 0.699159
Target:  5'- uCGACUUGcGGCcGAGCGccGCGUCGAAc- -3'
miRNA:   3'- -GCUGGAC-CCGcUUCGU--UGCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 35929 0.74 0.304254
Target:  5'- -cAUCUGGGCGGucGCGGCGCCGAc-- -3'
miRNA:   3'- gcUGGACCCGCUu-CGUUGCGGCUucc -5'
24029 5' -56 NC_005262.1 + 37716 0.69 0.581537
Target:  5'- gCGugCagaugGGGCGugaaGGGCugcGCGUCGAAGGg -3'
miRNA:   3'- -GCugGa----CCCGC----UUCGu--UGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 39138 0.66 0.760978
Target:  5'- uCGuCUuguUGGGCGuGGUGGCGCCGuuaccgauGAGGa -3'
miRNA:   3'- -GCuGG---ACCCGCuUCGUUGCGGC--------UUCC- -5'
24029 5' -56 NC_005262.1 + 42172 0.72 0.402508
Target:  5'- cCGAUCgucuguacgugaUGGGCGAcGGC-GCGCCGAAGa -3'
miRNA:   3'- -GCUGG------------ACCCGCU-UCGuUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 43128 0.67 0.66406
Target:  5'- cCGGCCgggucGauguacucguagcuGGCGAGGUAGCGgCCGAAGa -3'
miRNA:   3'- -GCUGGa----C--------------CCGCUUCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 43868 0.68 0.592201
Target:  5'- gGACCUcGGcGCGAucgcgcGCAugGCCGAcaugaagucgaAGGc -3'
miRNA:   3'- gCUGGA-CC-CGCUu-----CGUugCGGCU-----------UCC- -5'
24029 5' -56 NC_005262.1 + 46980 0.71 0.448019
Target:  5'- uCGGCCUguGGGCGAAggcauggcgcGCGACGCagaugggcgacauCGAGGGc -3'
miRNA:   3'- -GCUGGA--CCCGCUU----------CGUUGCG-------------GCUUCC- -5'
24029 5' -56 NC_005262.1 + 47619 0.71 0.468378
Target:  5'- aCGAUCcGGGCuucucGCGGCuGCCGGAGGa -3'
miRNA:   3'- -GCUGGaCCCGcuu--CGUUG-CGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 48999 0.66 0.749915
Target:  5'- aGACUggUGGaacaGCGAaaagggaacguucGGCGACGCCugGAAGGa -3'
miRNA:   3'- gCUGG--ACC----CGCU-------------UCGUUGCGG--CUUCC- -5'
24029 5' -56 NC_005262.1 + 49223 0.68 0.645835
Target:  5'- gCGGCCUcGGCGgcGCGcaguccGCGCgCGAGGu -3'
miRNA:   3'- -GCUGGAcCCGCuuCGU------UGCG-GCUUCc -5'
24029 5' -56 NC_005262.1 + 49883 0.66 0.720126
Target:  5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3'
miRNA:   3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 50804 0.69 0.581537
Target:  5'- -cGCCgaGGGCauGGAGCGcuucGCGCCGGAGa -3'
miRNA:   3'- gcUGGa-CCCG--CUUCGU----UGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 53461 0.66 0.750927
Target:  5'- gCGGUCUGcGGCaGgcGCAugGCGCCGAucAGGu -3'
miRNA:   3'- -GCUGGAC-CCG-CuuCGU--UGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 54203 0.69 0.539354
Target:  5'- aGGCgaGGGCGccGuCGACGUCGAGGc -3'
miRNA:   3'- gCUGgaCCCGCuuC-GUUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 55055 0.66 0.750927
Target:  5'- uGAUCgcgacGGGCauGGAGgAGCGCCGGcuGGGc -3'
miRNA:   3'- gCUGGa----CCCG--CUUCgUUGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 55304 0.67 0.667269
Target:  5'- gCGGCCUGcGCGAcgaAGCGACGgCGGu-- -3'
miRNA:   3'- -GCUGGACcCGCU---UCGUUGCgGCUucc -5'
24029 5' -56 NC_005262.1 + 55428 0.66 0.740761
Target:  5'- cCGGCUgGaGGCGAaacagGGCAGCGagaaGAAGGa -3'
miRNA:   3'- -GCUGGaC-CCGCU-----UCGUUGCgg--CUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.