miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 63410 0.66 0.740761
Target:  5'- uGACCUcGGCGAcGCGGCGCgCGu--- -3'
miRNA:   3'- gCUGGAcCCGCUuCGUUGCG-GCuucc -5'
24029 5' -56 NC_005262.1 + 61606 0.68 0.613618
Target:  5'- uCGACCga-GCaGAAGCGcgcGCGCCuGAAGGa -3'
miRNA:   3'- -GCUGGaccCG-CUUCGU---UGCGG-CUUCC- -5'
24029 5' -56 NC_005262.1 + 61403 0.72 0.40161
Target:  5'- aCGACCUcgcgcgcGaGGCGAAgGCGGCGgCCGAGGa -3'
miRNA:   3'- -GCUGGA-------C-CCGCUU-CGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 60836 0.66 0.750927
Target:  5'- cCGGCCUacgcgaucGGCGuGGCgAugGCCGAGGc -3'
miRNA:   3'- -GCUGGAc-------CCGCuUCG-UugCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 60212 0.69 0.560336
Target:  5'- cCGGCC--GGCGAggucGGCAAgcUGCUGAAGGa -3'
miRNA:   3'- -GCUGGacCCGCU----UCGUU--GCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 60147 0.7 0.528962
Target:  5'- aGGCaUGGGCGAAGUAcccggcCGCCGugAAGGc -3'
miRNA:   3'- gCUGgACCCGCUUCGUu-----GCGGC--UUCC- -5'
24029 5' -56 NC_005262.1 + 59500 0.68 0.624354
Target:  5'- aCGuGCCgcugaaGGGCGAcggcgAGUAugGCCcGAAGGu -3'
miRNA:   3'- -GC-UGGa-----CCCGCU-----UCGUugCGG-CUUCC- -5'
24029 5' -56 NC_005262.1 + 59095 0.66 0.709679
Target:  5'- gCGGCUUGcagacGGuCGAAGCGcgacgGCGCgGGAGGc -3'
miRNA:   3'- -GCUGGAC-----CC-GCUUCGU-----UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 57477 0.66 0.740761
Target:  5'- aGGuCgaGGGCGAgaAGCcggccgacgaGGCGCCGAAGu -3'
miRNA:   3'- gCU-GgaCCCGCU--UCG----------UUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 55938 0.67 0.703375
Target:  5'- gCGAUCgaGGGCGGcggccgucagaucauGGUcACGCCGGAGc -3'
miRNA:   3'- -GCUGGa-CCCGCU---------------UCGuUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 55428 0.66 0.740761
Target:  5'- cCGGCUgGaGGCGAaacagGGCAGCGagaaGAAGGa -3'
miRNA:   3'- -GCUGGaC-CCGCU-----UCGUUGCgg--CUUCC- -5'
24029 5' -56 NC_005262.1 + 55304 0.67 0.667269
Target:  5'- gCGGCCUGcGCGAcgaAGCGACGgCGGu-- -3'
miRNA:   3'- -GCUGGACcCGCU---UCGUUGCgGCUucc -5'
24029 5' -56 NC_005262.1 + 55055 0.66 0.750927
Target:  5'- uGAUCgcgacGGGCauGGAGgAGCGCCGGcuGGGc -3'
miRNA:   3'- gCUGGa----CCCG--CUUCgUUGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 54203 0.69 0.539354
Target:  5'- aGGCgaGGGCGccGuCGACGUCGAGGc -3'
miRNA:   3'- gCUGgaCCCGCuuC-GUUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 53461 0.66 0.750927
Target:  5'- gCGGUCUGcGGCaGgcGCAugGCGCCGAucAGGu -3'
miRNA:   3'- -GCUGGAC-CCG-CuuCGU--UGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 50804 0.69 0.581537
Target:  5'- -cGCCgaGGGCauGGAGCGcuucGCGCCGGAGa -3'
miRNA:   3'- gcUGGa-CCCG--CUUCGU----UGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 49883 0.66 0.720126
Target:  5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3'
miRNA:   3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 49223 0.68 0.645835
Target:  5'- gCGGCCUcGGCGgcGCGcaguccGCGCgCGAGGu -3'
miRNA:   3'- -GCUGGAcCCGCuuCGU------UGCG-GCUUCc -5'
24029 5' -56 NC_005262.1 + 48999 0.66 0.749915
Target:  5'- aGACUggUGGaacaGCGAaaagggaacguucGGCGACGCCugGAAGGa -3'
miRNA:   3'- gCUGG--ACC----CGCU-------------UCGUUGCGG--CUUCC- -5'
24029 5' -56 NC_005262.1 + 47619 0.71 0.468378
Target:  5'- aCGAUCcGGGCuucucGCGGCuGCCGGAGGa -3'
miRNA:   3'- -GCUGGaCCCGcuu--CGUUG-CGGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.