miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 989 0.75 0.269107
Target:  5'- gCGACCUgcgGGGCGggGCGGuguagagcuuguCGCCGAucuugAGGc -3'
miRNA:   3'- -GCUGGA---CCCGCuuCGUU------------GCGGCU-----UCC- -5'
24029 5' -56 NC_005262.1 + 23477 0.74 0.304254
Target:  5'- aCGAauggCUGGGCGAGGUucgcccgcuGACGCCcGAGGa -3'
miRNA:   3'- -GCUg---GACCCGCUUCG---------UUGCGGcUUCC- -5'
24029 5' -56 NC_005262.1 + 61403 0.72 0.40161
Target:  5'- aCGACCUcgcgcgcGaGGCGAAgGCGGCGgCCGAGGa -3'
miRNA:   3'- -GCUGGA-------C-CCGCUU-CGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 42172 0.72 0.402508
Target:  5'- cCGAUCgucuguacgugaUGGGCGAcGGC-GCGCCGAAGa -3'
miRNA:   3'- -GCUGG------------ACCCGCU-UCGuUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 23354 0.71 0.430029
Target:  5'- aCGGCC-GGcGUGAAGCGcgcgGCGgCGAAGGc -3'
miRNA:   3'- -GCUGGaCC-CGCUUCGU----UGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 29948 0.71 0.430029
Target:  5'- aCGACCcGGacGCG-GGCGGCGgCGAAGGu -3'
miRNA:   3'- -GCUGGaCC--CGCuUCGUUGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 12908 0.69 0.569852
Target:  5'- cCGGCCUGcuGGaCGAcgacaaccugcgcGGC-GCGCUGAAGGg -3'
miRNA:   3'- -GCUGGAC--CC-GCU-------------UCGuUGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 60212 0.69 0.560336
Target:  5'- cCGGCC--GGCGAggucGGCAAgcUGCUGAAGGa -3'
miRNA:   3'- -GCUGGacCCGCU----UCGUU--GCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 60147 0.7 0.528962
Target:  5'- aGGCaUGGGCGAAGUAcccggcCGCCGugAAGGc -3'
miRNA:   3'- gCUGgACCCGCUUCGUu-----GCGGC--UUCC- -5'
24029 5' -56 NC_005262.1 + 25458 0.7 0.502309
Target:  5'- aGGCgCUGcGCGAGGCGAUGCCGcucgccaacugcacgAAGGc -3'
miRNA:   3'- gCUG-GACcCGCUUCGUUGCGGC---------------UUCC- -5'
24029 5' -56 NC_005262.1 + 47619 0.71 0.468378
Target:  5'- aCGAUCcGGGCuucucGCGGCuGCCGGAGGa -3'
miRNA:   3'- -GCUGGaCCCGcuu--CGUUG-CGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 46980 0.71 0.448019
Target:  5'- uCGGCCUguGGGCGAAggcauggcgcGCGACGCagaugggcgacauCGAGGGc -3'
miRNA:   3'- -GCUGGA--CCCGCUU----------CGUUGCG-------------GCUUCC- -5'
24029 5' -56 NC_005262.1 + 49883 0.66 0.720126
Target:  5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3'
miRNA:   3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 26882 0.66 0.720126
Target:  5'- aGGCC-GGGCGccucAAGCGAauccgccaugUGCCGAAGc -3'
miRNA:   3'- gCUGGaCCCGC----UUCGUU----------GCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 18019 0.66 0.73049
Target:  5'- gCGACCUGcucgccguuGGCGu--CGGCGCCGAucGGc -3'
miRNA:   3'- -GCUGGAC---------CCGCuucGUUGCGGCUu-CC- -5'
24029 5' -56 NC_005262.1 + 63410 0.66 0.740761
Target:  5'- uGACCUcGGCGAcGCGGCGCgCGu--- -3'
miRNA:   3'- gCUGGAcCCGCUuCGUUGCG-GCuucc -5'
24029 5' -56 NC_005262.1 + 53461 0.66 0.750927
Target:  5'- gCGGUCUGcGGCaGgcGCAugGCGCCGAucAGGu -3'
miRNA:   3'- -GCUGGAC-CCG-CuuCGU--UGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 6387 0.66 0.750927
Target:  5'- gCGGCC--GGCGAGcGCAagaagGCGgCGAAGGc -3'
miRNA:   3'- -GCUGGacCCGCUU-CGU-----UGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 16473 0.66 0.754961
Target:  5'- cCGGCCgGGGCGgguucaaaAcugguugccgaacgcGGCGGCGCCGAu-- -3'
miRNA:   3'- -GCUGGaCCCGC--------U---------------UCGUUGCGGCUucc -5'
24029 5' -56 NC_005262.1 + 35929 0.74 0.304254
Target:  5'- -cAUCUGGGCGGucGCGGCGCCGAc-- -3'
miRNA:   3'- gcUGGACCCGCUu-CGUUGCGGCUucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.