miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24029 5' -56 NC_005262.1 + 39138 0.66 0.760978
Target:  5'- uCGuCUuguUGGGCGuGGUGGCGCCGuuaccgauGAGGa -3'
miRNA:   3'- -GCuGG---ACCCGCuUCGUUGCGGC--------UUCC- -5'
24029 5' -56 NC_005262.1 + 5114 0.67 0.688577
Target:  5'- cCGGCC--GGCG-AGCAAcugcCGCUGGAGGc -3'
miRNA:   3'- -GCUGGacCCGCuUCGUU----GCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 59095 0.66 0.709679
Target:  5'- gCGGCUUGcagacGGuCGAAGCGcgacgGCGCgGGAGGc -3'
miRNA:   3'- -GCUGGAC-----CC-GCUUCGU-----UGCGgCUUCC- -5'
24029 5' -56 NC_005262.1 + 49883 0.66 0.720126
Target:  5'- gGGCCggacggugcagGGGCGuccggcgcGGCAGCGgCCGGAGc -3'
miRNA:   3'- gCUGGa----------CCCGCu-------UCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 18019 0.66 0.73049
Target:  5'- gCGACCUGcucgccguuGGCGu--CGGCGCCGAucGGc -3'
miRNA:   3'- -GCUGGAC---------CCGCuucGUUGCGGCUu-CC- -5'
24029 5' -56 NC_005262.1 + 63410 0.66 0.740761
Target:  5'- uGACCUcGGCGAcGCGGCGCgCGu--- -3'
miRNA:   3'- gCUGGAcCCGCUuCGUUGCG-GCuucc -5'
24029 5' -56 NC_005262.1 + 35929 0.74 0.304254
Target:  5'- -cAUCUGGGCGGucGCGGCGCCGAc-- -3'
miRNA:   3'- gcUGGACCCGCUu-CGUUGCGGCUucc -5'
24029 5' -56 NC_005262.1 + 54203 0.69 0.539354
Target:  5'- aGGCgaGGGCGccGuCGACGUCGAGGc -3'
miRNA:   3'- gCUGgaCCCGCuuC-GUUGCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 55304 0.67 0.667269
Target:  5'- gCGGCCUGcGCGAcgaAGCGACGgCGGu-- -3'
miRNA:   3'- -GCUGGACcCGCU---UCGUUGCgGCUucc -5'
24029 5' -56 NC_005262.1 + 35050 0.67 0.699159
Target:  5'- uCGACUUGcGGCcGAGCGccGCGUCGAAc- -3'
miRNA:   3'- -GCUGGAC-CCGcUUCGU--UGCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 26882 0.66 0.720126
Target:  5'- aGGCC-GGGCGccucAAGCGAauccgccaugUGCCGAAGc -3'
miRNA:   3'- gCUGGaCCCGC----UUCGUU----------GCGGCUUCc -5'
24029 5' -56 NC_005262.1 + 16473 0.66 0.754961
Target:  5'- cCGGCCgGGGCGgguucaaaAcugguugccgaacgcGGCGGCGCCGAu-- -3'
miRNA:   3'- -GCUGGaCCCGC--------U---------------UCGUUGCGGCUucc -5'
24029 5' -56 NC_005262.1 + 43128 0.67 0.66406
Target:  5'- cCGGCCgggucGauguacucguagcuGGCGAGGUAGCGgCCGAAGa -3'
miRNA:   3'- -GCUGGa----C--------------CCGCUUCGUUGC-GGCUUCc -5'
24029 5' -56 NC_005262.1 + 6387 0.66 0.750927
Target:  5'- gCGGCC--GGCGAGcGCAagaagGCGgCGAAGGc -3'
miRNA:   3'- -GCUGGacCCGCUU-CGU-----UGCgGCUUCC- -5'
24029 5' -56 NC_005262.1 + 2523 0.67 0.699159
Target:  5'- aGACC--GGCGAguGGCAGgcaGCCGAGGa -3'
miRNA:   3'- gCUGGacCCGCU--UCGUUg--CGGCUUCc -5'
24029 5' -56 NC_005262.1 + 33469 0.68 0.623279
Target:  5'- uGAgCUGGGCGgcGuCGACgaucacgGCCGgcGGg -3'
miRNA:   3'- gCUgGACCCGCuuC-GUUG-------CGGCuuCC- -5'
24029 5' -56 NC_005262.1 + 53461 0.66 0.750927
Target:  5'- gCGGUCUGcGGCaGgcGCAugGCGCCGAucAGGu -3'
miRNA:   3'- -GCUGGAC-CCG-CuuCGU--UGCGGCU--UCC- -5'
24029 5' -56 NC_005262.1 + 34883 0.67 0.674746
Target:  5'- aCGGCUUGaGGCGAAGCcAcaccuucaccgaucCGCCGAGc- -3'
miRNA:   3'- -GCUGGAC-CCGCUUCGuU--------------GCGGCUUcc -5'
24029 5' -56 NC_005262.1 + 12908 0.69 0.569852
Target:  5'- cCGGCCUGcuGGaCGAcgacaaccugcgcGGC-GCGCUGAAGGg -3'
miRNA:   3'- -GCUGGAC--CC-GCU-------------UCGuUGCGGCUUCC- -5'
24029 5' -56 NC_005262.1 + 60212 0.69 0.560336
Target:  5'- cCGGCC--GGCGAggucGGCAAgcUGCUGAAGGa -3'
miRNA:   3'- -GCUGGacCCGCU----UCGUU--GCGGCUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.