miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 12949 0.66 0.663523
Target:  5'- -cCGUGcACGGCaGCGCgaaGCUcggcacgacgguUCCCGCGa -3'
miRNA:   3'- ccGUAC-UGCCG-CGCGa--UGA------------AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 5196 0.66 0.663523
Target:  5'- gGGCGcGGcCGGCGCGaccgaggGCguaUCCUGCAc -3'
miRNA:   3'- -CCGUaCU-GCCGCGCga-----UGa--AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 17087 0.66 0.663523
Target:  5'- aGCAcGACGaGCGCGCgcuCggCCgGCGg -3'
miRNA:   3'- cCGUaCUGC-CGCGCGau-GaaGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 11562 0.66 0.663523
Target:  5'- uGCAUcAC-GCGCGCUGCUaugCCgGCGg -3'
miRNA:   3'- cCGUAcUGcCGCGCGAUGAa--GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 32421 0.66 0.661379
Target:  5'- aGGCGaucacgccugccUGACGGCccaugaacagcgcacGCGCUGCcucgacguucgcgCCCGCGc -3'
miRNA:   3'- -CCGU------------ACUGCCG---------------CGCGAUGaa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12639 0.66 0.660306
Target:  5'- cGGCAccgUGaagaagaagcgcgcGCGGCGCGCgGCgaacCCUGCGc -3'
miRNA:   3'- -CCGU---AC--------------UGCCGCGCGaUGaa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 54533 0.66 0.652793
Target:  5'- uGCGcUGAuacuuccgguCGGCGCGCgcgGCggCCUGCGc -3'
miRNA:   3'- cCGU-ACU----------GCCGCGCGa--UGaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 59716 0.66 0.652793
Target:  5'- aGGagaGACuGGCGCGCgagguuCUUCUCGCc -3'
miRNA:   3'- -CCguaCUG-CCGCGCGau----GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 297 0.66 0.652793
Target:  5'- cGGCAUGcucgUGcGCGCGCUGCggaucgUCaCCgGCAc -3'
miRNA:   3'- -CCGUACu---GC-CGCGCGAUGa-----AG-GG-CGU- -5'
24030 3' -57.4 NC_005262.1 + 9182 0.66 0.642045
Target:  5'- cGCAUGGCGGUcgGCGCagAUcagCCCGUc -3'
miRNA:   3'- cCGUACUGCCG--CGCGa-UGaa-GGGCGu -5'
24030 3' -57.4 NC_005262.1 + 49149 0.66 0.642045
Target:  5'- cGGCAcgGugGGCGUGCaggccGCaUCggCCGCAg -3'
miRNA:   3'- -CCGUa-CugCCGCGCGa----UGaAG--GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 36892 0.66 0.642045
Target:  5'- cGCA-GACGaaGCGgacgcucaagcuCUACUUCCCGCGu -3'
miRNA:   3'- cCGUaCUGCcgCGC------------GAUGAAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 52150 0.66 0.642045
Target:  5'- uGGgA-GGCGGCGCGCaACUacCCCGg- -3'
miRNA:   3'- -CCgUaCUGCCGCGCGaUGAa-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 10580 0.66 0.631288
Target:  5'- uGGCcgccAUGcUGGCGCuGCUGCUggUCgCCGCu -3'
miRNA:   3'- -CCG----UACuGCCGCG-CGAUGA--AG-GGCGu -5'
24030 3' -57.4 NC_005262.1 + 26400 0.66 0.631288
Target:  5'- gGGCAUccagcaGACGcGCGaCGCg--UUCCCGCu -3'
miRNA:   3'- -CCGUA------CUGC-CGC-GCGaugAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 51416 0.66 0.628061
Target:  5'- cGCGUGcucgGCGGCGCGCgcgaggGCgauaccgucacgacgUCCGCAg -3'
miRNA:   3'- cCGUAC----UGCCGCGCGa-----UGaa-------------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 46923 0.66 0.624834
Target:  5'- aGCAcGcCGGCGCGCUuuucucggcgagcgcGCgggCCUGCAc -3'
miRNA:   3'- cCGUaCuGCCGCGCGA---------------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 17169 0.66 0.620532
Target:  5'- cGGCAaGGCcGCGCGCgaggACgcgaCCGCGu -3'
miRNA:   3'- -CCGUaCUGcCGCGCGa---UGaag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 5049 0.66 0.620532
Target:  5'- cGGCGccUGAuCGGCGgGCagg--CCCGCGg -3'
miRNA:   3'- -CCGU--ACU-GCCGCgCGaugaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 44320 0.66 0.620532
Target:  5'- cGGguUGA-GGCGCGUcaccgguCUggugCCCGCAa -3'
miRNA:   3'- -CCguACUgCCGCGCGau-----GAa---GGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.