miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 54533 0.66 0.652793
Target:  5'- uGCGcUGAuacuuccgguCGGCGCGCgcgGCggCCUGCGc -3'
miRNA:   3'- cCGU-ACU----------GCCGCGCGa--UGaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12639 0.66 0.660306
Target:  5'- cGGCAccgUGaagaagaagcgcgcGCGGCGCGCgGCgaacCCUGCGc -3'
miRNA:   3'- -CCGU---AC--------------UGCCGCGCGaUGaa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49149 0.66 0.642045
Target:  5'- cGGCAcgGugGGCGUGCaggccGCaUCggCCGCAg -3'
miRNA:   3'- -CCGUa-CugCCGCGCGa----UGaAG--GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 36892 0.66 0.642045
Target:  5'- cGCA-GACGaaGCGgacgcucaagcuCUACUUCCCGCGu -3'
miRNA:   3'- cCGUaCUGCcgCGC------------GAUGAAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 28585 0.67 0.567068
Target:  5'- cGGCAUGcccuACGGCGUGauccGCUUCaugCGCGg -3'
miRNA:   3'- -CCGUAC----UGCCGCGCga--UGAAGg--GCGU- -5'
24030 3' -57.4 NC_005262.1 + 53063 0.67 0.599058
Target:  5'- cGCGcUGAcCGGCGCgaucgcgaaGCUGCUguaUCCGCAg -3'
miRNA:   3'- cCGU-ACU-GCCGCG---------CGAUGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 57941 0.67 0.599058
Target:  5'- cGGCAUucaacguggagGGCGcgaGCGCGCUugaaauugGCgcgCCCGCAu -3'
miRNA:   3'- -CCGUA-----------CUGC---CGCGCGA--------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 26000 0.67 0.577691
Target:  5'- cGCGUGGCGacguaccauGCGCGCUGCU--CgGCAu -3'
miRNA:   3'- cCGUACUGC---------CGCGCGAUGAagGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 45778 0.67 0.566009
Target:  5'- cGGCAUcgcggcgaagggcGGCGGCGUGCUGauccaggaCCGCu -3'
miRNA:   3'- -CCGUA-------------CUGCCGCGCGAUgaag----GGCGu -5'
24030 3' -57.4 NC_005262.1 + 62726 0.67 0.545981
Target:  5'- cGCAcccUGAuCGGCGCGCUgGCggucagCgCCGCAg -3'
miRNA:   3'- cCGU---ACU-GCCGCGCGA-UGaa----G-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 55057 0.67 0.567068
Target:  5'- cGCGccaGAUGGCGCGCUucugguUUUCgCGCAg -3'
miRNA:   3'- cCGUa--CUGCCGCGCGAu-----GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 58659 0.67 0.599058
Target:  5'- -cCAUGcCGGCGUGCcgaucaGCUUCUCGCc -3'
miRNA:   3'- ccGUACuGCCGCGCGa-----UGAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 23636 0.67 0.599058
Target:  5'- cGGCG-GGCGGUuggucagucuGCGCgguCcUCCCGCGc -3'
miRNA:   3'- -CCGUaCUGCCG----------CGCGau-GaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 50407 0.67 0.567068
Target:  5'- uGCGcGGCGG-GCGCUGCggCCgGCu -3'
miRNA:   3'- cCGUaCUGCCgCGCGAUGaaGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 63404 0.67 0.567068
Target:  5'- cGGCGacGCGGCGCGCgugUUCCaCGUc -3'
miRNA:   3'- -CCGUacUGCCGCGCGaugAAGG-GCGu -5'
24030 3' -57.4 NC_005262.1 + 16970 0.67 0.566009
Target:  5'- cGGUGUGGugcggccCGGCGCGCgGCcgggcgCCUGCAu -3'
miRNA:   3'- -CCGUACU-------GCCGCGCGaUGaa----GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 51659 0.67 0.545981
Target:  5'- ----gGGCGGCGCGCUcaaGCU-CCgCGCGc -3'
miRNA:   3'- ccguaCUGCCGCGCGA---UGAaGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 15161 0.67 0.567068
Target:  5'- cGGCGcggauguugGACGGCacgcaGCGCUACgcggcgUUCUGCAa -3'
miRNA:   3'- -CCGUa--------CUGCCG-----CGCGAUGa-----AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 62933 0.68 0.525152
Target:  5'- uGGCAaagGACGagcgcgauuuGCGCGCgucGCUUCCgGCc -3'
miRNA:   3'- -CCGUa--CUGC----------CGCGCGa--UGAAGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 14213 0.68 0.525152
Target:  5'- cGGCAcUGACGGCGgGCgcgAUgucgaCCaCGCAc -3'
miRNA:   3'- -CCGU-ACUGCCGCgCGa--UGaa---GG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.