miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 49221 0.7 0.381404
Target:  5'- gGGCGgccucGGCGGCGCGCag--UCCgCGCGc -3'
miRNA:   3'- -CCGUa----CUGCCGCGCGaugaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 61457 0.7 0.381404
Target:  5'- aGGCGgcgGACGGCgaaGCGCUAgacgacauCUUCgCGCGg -3'
miRNA:   3'- -CCGUa--CUGCCG---CGCGAU--------GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 59696 0.7 0.380535
Target:  5'- cGGCGUGccgccacGCGG-GCGCUACgucgCCgGCAa -3'
miRNA:   3'- -CCGUAC-------UGCCgCGCGAUGaa--GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 42635 0.7 0.426458
Target:  5'- cGGCAUGAUGGC-CGCc---UUCCGCGg -3'
miRNA:   3'- -CCGUACUGCCGcGCGaugaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 51451 0.69 0.474524
Target:  5'- cGGCGUcgcgGACGGCGCGgUGCcgagCUGCAu -3'
miRNA:   3'- -CCGUA----CUGCCGCGCgAUGaag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 168 0.69 0.464689
Target:  5'- aGCGUG-CGGCGCgGCcgACUUCUuCGCGa -3'
miRNA:   3'- cCGUACuGCCGCG-CGa-UGAAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 60750 0.69 0.435842
Target:  5'- aGCAUGcCGaGCGCGaugagUGCUUgCCCGCGg -3'
miRNA:   3'- cCGUACuGC-CGCGCg----AUGAA-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 48442 0.69 0.435842
Target:  5'- cGGCAUGACcacGCGCGCguaugCCgCGCGg -3'
miRNA:   3'- -CCGUACUGc--CGCGCGaugaaGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 23005 0.68 0.514849
Target:  5'- uGGCGUcGGCGaGCGCGUaGCagucUUCCGCGa -3'
miRNA:   3'- -CCGUA-CUGC-CGCGCGaUGa---AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 8352 0.68 0.525152
Target:  5'- gGGCAgcuuccuCGGC-CGCUGCUUUCgCGCGc -3'
miRNA:   3'- -CCGUacu----GCCGcGCGAUGAAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 46523 0.68 0.514849
Target:  5'- cGGCGcgGGCGGCGCGgCggGCc-CCUGCGg -3'
miRNA:   3'- -CCGUa-CUGCCGCGC-Ga-UGaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 55879 0.68 0.535531
Target:  5'- ----cGGCGGCGUuCUGCUcgaagCCCGCAa -3'
miRNA:   3'- ccguaCUGCCGCGcGAUGAa----GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 24300 0.68 0.4945
Target:  5'- cGGCGUGcCGGCGCaGCgucgcgGCUg-CCGCc -3'
miRNA:   3'- -CCGUACuGCCGCG-CGa-----UGAagGGCGu -5'
24030 3' -57.4 NC_005262.1 + 63674 0.68 0.484463
Target:  5'- cGGCGggGGCGGCGgagccagacaCGCUACcgCCgGCGg -3'
miRNA:   3'- -CCGUa-CUGCCGC----------GCGAUGaaGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 14213 0.68 0.525152
Target:  5'- cGGCAcUGACGGCGgGCgcgAUgucgaCCaCGCAc -3'
miRNA:   3'- -CCGU-ACUGCCGCgCGa--UGaa---GG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 62933 0.68 0.525152
Target:  5'- uGGCAaagGACGagcgcgauuuGCGCGCgucGCUUCCgGCc -3'
miRNA:   3'- -CCGUa--CUGC----------CGCGCGa--UGAAGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 25119 0.68 0.525152
Target:  5'- aGG-AUGAgcUGGCGCGCUGCUUgUCCGa- -3'
miRNA:   3'- -CCgUACU--GCCGCGCGAUGAA-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 46390 0.68 0.514849
Target:  5'- aGGCc-GAacaGGCGCGCcucgucggGCUgggCCCGCAa -3'
miRNA:   3'- -CCGuaCUg--CCGCGCGa-------UGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 4573 0.68 0.502597
Target:  5'- cGCGccaGCGGCgGCGCUGCUcgggcgugagcgCCCGCAg -3'
miRNA:   3'- cCGUac-UGCCG-CGCGAUGAa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 35719 0.68 0.4945
Target:  5'- cGGCggGACGGCcaCGCUGa-UCCuCGCAu -3'
miRNA:   3'- -CCGuaCUGCCGc-GCGAUgaAGG-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.