Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24030 | 3' | -57.4 | NC_005262.1 | + | 4573 | 0.68 | 0.502597 |
Target: 5'- cGCGccaGCGGCgGCGCUGCUcgggcgugagcgCCCGCAg -3' miRNA: 3'- cCGUac-UGCCG-CGCGAUGAa-----------GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 35719 | 0.68 | 0.4945 |
Target: 5'- cGGCggGACGGCcaCGCUGa-UCCuCGCAu -3' miRNA: 3'- -CCGuaCUGCCGc-GCGAUgaAGG-GCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 26000 | 0.67 | 0.577691 |
Target: 5'- cGCGUGGCGacguaccauGCGCGCUGCU--CgGCAu -3' miRNA: 3'- cCGUACUGC---------CGCGCGAUGAagGgCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 23636 | 0.67 | 0.599058 |
Target: 5'- cGGCG-GGCGGUuggucagucuGCGCgguCcUCCCGCGc -3' miRNA: 3'- -CCGUaCUGCCG----------CGCGau-GaAGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 58659 | 0.67 | 0.599058 |
Target: 5'- -cCAUGcCGGCGUGCcgaucaGCUUCUCGCc -3' miRNA: 3'- ccGUACuGCCGCGCGa-----UGAAGGGCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 51659 | 0.67 | 0.545981 |
Target: 5'- ----gGGCGGCGCGCUcaaGCU-CCgCGCGc -3' miRNA: 3'- ccguaCUGCCGCGCGA---UGAaGG-GCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 62726 | 0.67 | 0.545981 |
Target: 5'- cGCAcccUGAuCGGCGCGCUgGCggucagCgCCGCAg -3' miRNA: 3'- cCGU---ACU-GCCGCGCGA-UGaa----G-GGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 45778 | 0.67 | 0.566009 |
Target: 5'- cGGCAUcgcggcgaagggcGGCGGCGUGCUGauccaggaCCGCu -3' miRNA: 3'- -CCGUA-------------CUGCCGCGCGAUgaag----GGCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 15161 | 0.67 | 0.567068 |
Target: 5'- cGGCGcggauguugGACGGCacgcaGCGCUACgcggcgUUCUGCAa -3' miRNA: 3'- -CCGUa--------CUGCCG-----CGCGAUGa-----AGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 28585 | 0.67 | 0.567068 |
Target: 5'- cGGCAUGcccuACGGCGUGauccGCUUCaugCGCGg -3' miRNA: 3'- -CCGUAC----UGCCGCGCga--UGAAGg--GCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 53063 | 0.67 | 0.599058 |
Target: 5'- cGCGcUGAcCGGCGCgaucgcgaaGCUGCUguaUCCGCAg -3' miRNA: 3'- cCGU-ACU-GCCGCG---------CGAUGAa--GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 57941 | 0.67 | 0.599058 |
Target: 5'- cGGCAUucaacguggagGGCGcgaGCGCGCUugaaauugGCgcgCCCGCAu -3' miRNA: 3'- -CCGUA-----------CUGC---CGCGCGA--------UGaa-GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 55057 | 0.67 | 0.567068 |
Target: 5'- cGCGccaGAUGGCGCGCUucugguUUUCgCGCAg -3' miRNA: 3'- cCGUa--CUGCCGCGCGAu-----GAAGgGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 50407 | 0.67 | 0.567068 |
Target: 5'- uGCGcGGCGG-GCGCUGCggCCgGCu -3' miRNA: 3'- cCGUaCUGCCgCGCGAUGaaGGgCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 16970 | 0.67 | 0.566009 |
Target: 5'- cGGUGUGGugcggccCGGCGCGCgGCcgggcgCCUGCAu -3' miRNA: 3'- -CCGUACU-------GCCGCGCGaUGaa----GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 63404 | 0.67 | 0.567068 |
Target: 5'- cGGCGacGCGGCGCGCgugUUCCaCGUc -3' miRNA: 3'- -CCGUacUGCCGCGCGaugAAGG-GCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 6596 | 0.66 | 0.609786 |
Target: 5'- cGGCGaGGuCGGCGCGCUGaucgUCgaGCGg -3' miRNA: 3'- -CCGUaCU-GCCGCGCGAUga--AGggCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 54929 | 0.66 | 0.620532 |
Target: 5'- aGCcgGuCGGCGCGCUGCgugUCgGUc -3' miRNA: 3'- cCGuaCuGCCGCGCGAUGaa-GGgCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 58297 | 0.66 | 0.620532 |
Target: 5'- uGGUAcgGGCGGCGcCGCU-CU--CCGCAg -3' miRNA: 3'- -CCGUa-CUGCCGC-GCGAuGAagGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 46923 | 0.66 | 0.624834 |
Target: 5'- aGCAcGcCGGCGCGCUuuucucggcgagcgcGCgggCCUGCAc -3' miRNA: 3'- cCGUaCuGCCGCGCGA---------------UGaa-GGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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