miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 168 0.69 0.464689
Target:  5'- aGCGUG-CGGCGCgGCcgACUUCUuCGCGa -3'
miRNA:   3'- cCGUACuGCCGCG-CGa-UGAAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 297 0.66 0.652793
Target:  5'- cGGCAUGcucgUGcGCGCGCUGCggaucgUCaCCgGCAc -3'
miRNA:   3'- -CCGUACu---GC-CGCGCGAUGa-----AG-GG-CGU- -5'
24030 3' -57.4 NC_005262.1 + 4573 0.68 0.502597
Target:  5'- cGCGccaGCGGCgGCGCUGCUcgggcgugagcgCCCGCAg -3'
miRNA:   3'- cCGUac-UGCCG-CGCGAUGAa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 4904 0.71 0.346906
Target:  5'- cGGCGUGACGuCGgGCaguuUGCUcucgaugUCCCGCAc -3'
miRNA:   3'- -CCGUACUGCcGCgCG----AUGA-------AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 5049 0.66 0.620532
Target:  5'- cGGCGccUGAuCGGCGgGCagg--CCCGCGg -3'
miRNA:   3'- -CCGU--ACU-GCCGCgCGaugaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 5196 0.66 0.663523
Target:  5'- gGGCGcGGcCGGCGCGaccgaggGCguaUCCUGCAc -3'
miRNA:   3'- -CCGUaCU-GCCGCGCga-----UGa--AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 6596 0.66 0.609786
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCgaGCGg -3'
miRNA:   3'- -CCGUaCU-GCCGCGCGAUga--AGggCGU- -5'
24030 3' -57.4 NC_005262.1 + 7538 0.73 0.266371
Target:  5'- cGGCGcGuCGGCGCGCUcgacgacaucCUUCCCGUg -3'
miRNA:   3'- -CCGUaCuGCCGCGCGAu---------GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 8352 0.68 0.525152
Target:  5'- gGGCAgcuuccuCGGC-CGCUGCUUUCgCGCGc -3'
miRNA:   3'- -CCGUacu----GCCGcGCGAUGAAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 9182 0.66 0.642045
Target:  5'- cGCAUGGCGGUcgGCGCagAUcagCCCGUc -3'
miRNA:   3'- cCGUACUGCCG--CGCGa-UGaa-GGGCGu -5'
24030 3' -57.4 NC_005262.1 + 10580 0.66 0.631288
Target:  5'- uGGCcgccAUGcUGGCGCuGCUGCUggUCgCCGCu -3'
miRNA:   3'- -CCG----UACuGCCGCG-CGAUGA--AG-GGCGu -5'
24030 3' -57.4 NC_005262.1 + 11562 0.66 0.663523
Target:  5'- uGCAUcAC-GCGCGCUGCUaugCCgGCGg -3'
miRNA:   3'- cCGUAcUGcCGCGCGAUGAa--GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 12554 0.7 0.417195
Target:  5'- cGGCAggucgcGGCGGCGCucgucgagcuGCUGCUgccgCCgGCGa -3'
miRNA:   3'- -CCGUa-----CUGCCGCG----------CGAUGAa---GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 12639 0.66 0.660306
Target:  5'- cGGCAccgUGaagaagaagcgcgcGCGGCGCGCgGCgaacCCUGCGc -3'
miRNA:   3'- -CCGU---AC--------------UGCCGCGCGaUGaa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12694 0.68 0.535531
Target:  5'- cGGCGaggGAgGGCGCGCUca--UCCGCGa -3'
miRNA:   3'- -CCGUa--CUgCCGCGCGAugaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12949 0.66 0.663523
Target:  5'- -cCGUGcACGGCaGCGCgaaGCUcggcacgacgguUCCCGCGa -3'
miRNA:   3'- ccGUAC-UGCCG-CGCGa--UGA------------AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 14213 0.68 0.525152
Target:  5'- cGGCAcUGACGGCGgGCgcgAUgucgaCCaCGCAc -3'
miRNA:   3'- -CCGU-ACUGCCGCgCGa--UGaa---GG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 15161 0.67 0.567068
Target:  5'- cGGCGcggauguugGACGGCacgcaGCGCUACgcggcgUUCUGCAa -3'
miRNA:   3'- -CCGUa--------CUGCCG-----CGCGAUGa-----AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 16970 0.67 0.566009
Target:  5'- cGGUGUGGugcggccCGGCGCGCgGCcgggcgCCUGCAu -3'
miRNA:   3'- -CCGUACU-------GCCGCGCGaUGaa----GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 17087 0.66 0.663523
Target:  5'- aGCAcGACGaGCGCGCgcuCggCCgGCGg -3'
miRNA:   3'- cCGUaCUGC-CGCGCGau-GaaGGgCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.