miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 17169 0.66 0.620532
Target:  5'- cGGCAaGGCcGCGCGCgaggACgcgaCCGCGu -3'
miRNA:   3'- -CCGUaCUGcCGCGCGa---UGaag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 22813 0.7 0.399043
Target:  5'- cGGCAUGugGcucCGCGaCUACUUCgCgGCGa -3'
miRNA:   3'- -CCGUACugCc--GCGC-GAUGAAG-GgCGU- -5'
24030 3' -57.4 NC_005262.1 + 23005 0.68 0.514849
Target:  5'- uGGCGUcGGCGaGCGCGUaGCagucUUCCGCGa -3'
miRNA:   3'- -CCGUA-CUGC-CGCGCGaUGa---AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 23359 0.75 0.185914
Target:  5'- cGGCGUGAa-GCGCGCggcgGCgaaggCCCGCAa -3'
miRNA:   3'- -CCGUACUgcCGCGCGa---UGaa---GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 23636 0.67 0.599058
Target:  5'- cGGCG-GGCGGUuggucagucuGCGCgguCcUCCCGCGc -3'
miRNA:   3'- -CCGUaCUGCCG----------CGCGau-GaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 24300 0.68 0.4945
Target:  5'- cGGCGUGcCGGCGCaGCgucgcgGCUg-CCGCc -3'
miRNA:   3'- -CCGUACuGCCGCG-CGa-----UGAagGGCGu -5'
24030 3' -57.4 NC_005262.1 + 24928 0.71 0.34772
Target:  5'- aGGCAUGGCGGgaUGCGC-ACaUgCCGCGc -3'
miRNA:   3'- -CCGUACUGCC--GCGCGaUGaAgGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 25119 0.68 0.525152
Target:  5'- aGG-AUGAgcUGGCGCGCUGCUUgUCCGa- -3'
miRNA:   3'- -CCgUACU--GCCGCGCGAUGAA-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 26000 0.67 0.577691
Target:  5'- cGCGUGGCGacguaccauGCGCGCUGCU--CgGCAu -3'
miRNA:   3'- cCGUACUGC---------CGCGCGAUGAagGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 26400 0.66 0.631288
Target:  5'- gGGCAUccagcaGACGcGCGaCGCg--UUCCCGCu -3'
miRNA:   3'- -CCGUA------CUGC-CGC-GCGaugAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 28585 0.67 0.567068
Target:  5'- cGGCAUGcccuACGGCGUGauccGCUUCaugCGCGg -3'
miRNA:   3'- -CCGUAC----UGCCGCGCga--UGAAGg--GCGU- -5'
24030 3' -57.4 NC_005262.1 + 30944 1.11 0.000543
Target:  5'- cGGCAUGACGGCGCGCUACUUCCCGCAg -3'
miRNA:   3'- -CCGUACUGCCGCGCGAUGAAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 32421 0.66 0.661379
Target:  5'- aGGCGaucacgccugccUGACGGCccaugaacagcgcacGCGCUGCcucgacguucgcgCCCGCGc -3'
miRNA:   3'- -CCGU------------ACUGCCG---------------CGCGAUGaa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 32499 0.75 0.206429
Target:  5'- cGGCAgcGAUGGCGgGCUcgUUCCCGUAg -3'
miRNA:   3'- -CCGUa-CUGCCGCgCGAugAAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 33653 0.7 0.390158
Target:  5'- aGGC-UGACGaGCGCGCcucGCUggUCgCCGCGu -3'
miRNA:   3'- -CCGuACUGC-CGCGCGa--UGA--AG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 34496 0.71 0.331693
Target:  5'- cGCGcGGCGGCGCGCgACUUCU-GCGa -3'
miRNA:   3'- cCGUaCUGCCGCGCGaUGAAGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 35092 0.71 0.339638
Target:  5'- uGGUAcgGACGGgccCGCGCUGCUgCCCGg- -3'
miRNA:   3'- -CCGUa-CUGCC---GCGCGAUGAaGGGCgu -5'
24030 3' -57.4 NC_005262.1 + 35719 0.68 0.4945
Target:  5'- cGGCggGACGGCcaCGCUGa-UCCuCGCAu -3'
miRNA:   3'- -CCGuaCUGCCGc-GCGAUgaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 36892 0.66 0.642045
Target:  5'- cGCA-GACGaaGCGgacgcucaagcuCUACUUCCCGCGu -3'
miRNA:   3'- cCGUaCUGCcgCGC------------GAUGAAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 40978 0.71 0.355939
Target:  5'- cGGCGUcggguuucuggcGGCGGCGCucGCUGCUgauggCaCCGCGa -3'
miRNA:   3'- -CCGUA------------CUGCCGCG--CGAUGAa----G-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.