Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24030 | 3' | -57.4 | NC_005262.1 | + | 54533 | 0.66 | 0.652793 |
Target: 5'- uGCGcUGAuacuuccgguCGGCGCGCgcgGCggCCUGCGc -3' miRNA: 3'- cCGU-ACU----------GCCGCGCGa--UGaaGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 54929 | 0.66 | 0.620532 |
Target: 5'- aGCcgGuCGGCGCGCUGCgugUCgGUc -3' miRNA: 3'- cCGuaCuGCCGCGCGAUGaa-GGgCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 55057 | 0.67 | 0.567068 |
Target: 5'- cGCGccaGAUGGCGCGCUucugguUUUCgCGCAg -3' miRNA: 3'- cCGUa--CUGCCGCGCGAu-----GAAGgGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 55737 | 0.7 | 0.417195 |
Target: 5'- cGGCGUGccggacgcggccACGaGCGCGCggcccgGCUUCuuGCu -3' miRNA: 3'- -CCGUAC------------UGC-CGCGCGa-----UGAAGggCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 55879 | 0.68 | 0.535531 |
Target: 5'- ----cGGCGGCGUuCUGCUcgaagCCCGCAa -3' miRNA: 3'- ccguaCUGCCGCGcGAUGAa----GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 57941 | 0.67 | 0.599058 |
Target: 5'- cGGCAUucaacguggagGGCGcgaGCGCGCUugaaauugGCgcgCCCGCAu -3' miRNA: 3'- -CCGUA-----------CUGC---CGCGCGA--------UGaa-GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 58297 | 0.66 | 0.620532 |
Target: 5'- uGGUAcgGGCGGCGcCGCU-CU--CCGCAg -3' miRNA: 3'- -CCGUa-CUGCCGC-GCGAuGAagGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 58659 | 0.67 | 0.599058 |
Target: 5'- -cCAUGcCGGCGUGCcgaucaGCUUCUCGCc -3' miRNA: 3'- ccGUACuGCCGCGCGa-----UGAAGGGCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 58919 | 0.71 | 0.372781 |
Target: 5'- cGGCGgcccgaccGAUGGCGCGC-GCUUCUCGg- -3' miRNA: 3'- -CCGUa-------CUGCCGCGCGaUGAAGGGCgu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 59696 | 0.7 | 0.380535 |
Target: 5'- cGGCGUGccgccacGCGG-GCGCUACgucgCCgGCAa -3' miRNA: 3'- -CCGUAC-------UGCCgCGCGAUGaa--GGgCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 59716 | 0.66 | 0.652793 |
Target: 5'- aGGagaGACuGGCGCGCgagguuCUUCUCGCc -3' miRNA: 3'- -CCguaCUG-CCGCGCGau----GAAGGGCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 60679 | 0.73 | 0.273083 |
Target: 5'- cGGCAUGcUGGCGaCGCUggGCUUCUuCGCGg -3' miRNA: 3'- -CCGUACuGCCGC-GCGA--UGAAGG-GCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 60750 | 0.69 | 0.435842 |
Target: 5'- aGCAUGcCGaGCGCGaugagUGCUUgCCCGCGg -3' miRNA: 3'- cCGUACuGC-CGCGCg----AUGAA-GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 61457 | 0.7 | 0.381404 |
Target: 5'- aGGCGgcgGACGGCgaaGCGCUAgacgacauCUUCgCGCGg -3' miRNA: 3'- -CCGUa--CUGCCG---CGCGAU--------GAAGgGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 61714 | 0.7 | 0.408056 |
Target: 5'- gGGUucgcuCGGCGCGCUcugcuuACUUCgCCGCGu -3' miRNA: 3'- -CCGuacu-GCCGCGCGA------UGAAG-GGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 62726 | 0.67 | 0.545981 |
Target: 5'- cGCAcccUGAuCGGCGCGCUgGCggucagCgCCGCAg -3' miRNA: 3'- cCGU---ACU-GCCGCGCGA-UGaa----G-GGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 62933 | 0.68 | 0.525152 |
Target: 5'- uGGCAaagGACGagcgcgauuuGCGCGCgucGCUUCCgGCc -3' miRNA: 3'- -CCGUa--CUGC----------CGCGCGa--UGAAGGgCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 63179 | 0.72 | 0.286914 |
Target: 5'- gGGCGUGugGGUgcgccagaagcaGCGCUAUgacaCCUGCAu -3' miRNA: 3'- -CCGUACugCCG------------CGCGAUGaa--GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 63404 | 0.67 | 0.567068 |
Target: 5'- cGGCGacGCGGCGCGCgugUUCCaCGUc -3' miRNA: 3'- -CCGUacUGCCGCGCGaugAAGG-GCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 63674 | 0.68 | 0.484463 |
Target: 5'- cGGCGggGGCGGCGgagccagacaCGCUACcgCCgGCGg -3' miRNA: 3'- -CCGUa-CUGCCGC----------GCGAUGaaGGgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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