miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 63674 0.68 0.484463
Target:  5'- cGGCGggGGCGGCGgagccagacaCGCUACcgCCgGCGg -3'
miRNA:   3'- -CCGUa-CUGCCGC----------GCGAUGaaGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 63404 0.67 0.567068
Target:  5'- cGGCGacGCGGCGCGCgugUUCCaCGUc -3'
miRNA:   3'- -CCGUacUGCCGCGCGaugAAGG-GCGu -5'
24030 3' -57.4 NC_005262.1 + 63179 0.72 0.286914
Target:  5'- gGGCGUGugGGUgcgccagaagcaGCGCUAUgacaCCUGCAu -3'
miRNA:   3'- -CCGUACugCCG------------CGCGAUGaa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 62933 0.68 0.525152
Target:  5'- uGGCAaagGACGagcgcgauuuGCGCGCgucGCUUCCgGCc -3'
miRNA:   3'- -CCGUa--CUGC----------CGCGCGa--UGAAGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 62726 0.67 0.545981
Target:  5'- cGCAcccUGAuCGGCGCGCUgGCggucagCgCCGCAg -3'
miRNA:   3'- cCGU---ACU-GCCGCGCGA-UGaa----G-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 61714 0.7 0.408056
Target:  5'- gGGUucgcuCGGCGCGCUcugcuuACUUCgCCGCGu -3'
miRNA:   3'- -CCGuacu-GCCGCGCGA------UGAAG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 61457 0.7 0.381404
Target:  5'- aGGCGgcgGACGGCgaaGCGCUAgacgacauCUUCgCGCGg -3'
miRNA:   3'- -CCGUa--CUGCCG---CGCGAU--------GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 60750 0.69 0.435842
Target:  5'- aGCAUGcCGaGCGCGaugagUGCUUgCCCGCGg -3'
miRNA:   3'- cCGUACuGC-CGCGCg----AUGAA-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 60679 0.73 0.273083
Target:  5'- cGGCAUGcUGGCGaCGCUggGCUUCUuCGCGg -3'
miRNA:   3'- -CCGUACuGCCGC-GCGA--UGAAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 59716 0.66 0.652793
Target:  5'- aGGagaGACuGGCGCGCgagguuCUUCUCGCc -3'
miRNA:   3'- -CCguaCUG-CCGCGCGau----GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 59696 0.7 0.380535
Target:  5'- cGGCGUGccgccacGCGG-GCGCUACgucgCCgGCAa -3'
miRNA:   3'- -CCGUAC-------UGCCgCGCGAUGaa--GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 58919 0.71 0.372781
Target:  5'- cGGCGgcccgaccGAUGGCGCGC-GCUUCUCGg- -3'
miRNA:   3'- -CCGUa-------CUGCCGCGCGaUGAAGGGCgu -5'
24030 3' -57.4 NC_005262.1 + 58659 0.67 0.599058
Target:  5'- -cCAUGcCGGCGUGCcgaucaGCUUCUCGCc -3'
miRNA:   3'- ccGUACuGCCGCGCGa-----UGAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 58297 0.66 0.620532
Target:  5'- uGGUAcgGGCGGCGcCGCU-CU--CCGCAg -3'
miRNA:   3'- -CCGUa-CUGCCGC-GCGAuGAagGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 57941 0.67 0.599058
Target:  5'- cGGCAUucaacguggagGGCGcgaGCGCGCUugaaauugGCgcgCCCGCAu -3'
miRNA:   3'- -CCGUA-----------CUGC---CGCGCGA--------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 55879 0.68 0.535531
Target:  5'- ----cGGCGGCGUuCUGCUcgaagCCCGCAa -3'
miRNA:   3'- ccguaCUGCCGCGcGAUGAa----GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 55737 0.7 0.417195
Target:  5'- cGGCGUGccggacgcggccACGaGCGCGCggcccgGCUUCuuGCu -3'
miRNA:   3'- -CCGUAC------------UGC-CGCGCGa-----UGAAGggCGu -5'
24030 3' -57.4 NC_005262.1 + 55057 0.67 0.567068
Target:  5'- cGCGccaGAUGGCGCGCUucugguUUUCgCGCAg -3'
miRNA:   3'- cCGUa--CUGCCGCGCGAu-----GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 54929 0.66 0.620532
Target:  5'- aGCcgGuCGGCGCGCUGCgugUCgGUc -3'
miRNA:   3'- cCGuaCuGCCGCGCGAUGaa-GGgCGu -5'
24030 3' -57.4 NC_005262.1 + 54533 0.66 0.652793
Target:  5'- uGCGcUGAuacuuccgguCGGCGCGCgcgGCggCCUGCGc -3'
miRNA:   3'- cCGU-ACU----------GCCGCGCGa--UGaaGGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.