miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 53063 0.67 0.599058
Target:  5'- cGCGcUGAcCGGCGCgaucgcgaaGCUGCUguaUCCGCAg -3'
miRNA:   3'- cCGU-ACU-GCCGCG---------CGAUGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 52150 0.66 0.642045
Target:  5'- uGGgA-GGCGGCGCGCaACUacCCCGg- -3'
miRNA:   3'- -CCgUaCUGCCGCGCGaUGAa-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 51659 0.67 0.545981
Target:  5'- ----gGGCGGCGCGCUcaaGCU-CCgCGCGc -3'
miRNA:   3'- ccguaCUGCCGCGCGA---UGAaGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 51451 0.69 0.474524
Target:  5'- cGGCGUcgcgGACGGCGCGgUGCcgagCUGCAu -3'
miRNA:   3'- -CCGUA----CUGCCGCGCgAUGaag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 51416 0.66 0.628061
Target:  5'- cGCGUGcucgGCGGCGCGCgcgaggGCgauaccgucacgacgUCCGCAg -3'
miRNA:   3'- cCGUAC----UGCCGCGCGa-----UGaa-------------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 50407 0.67 0.567068
Target:  5'- uGCGcGGCGG-GCGCUGCggCCgGCu -3'
miRNA:   3'- cCGUaCUGCCgCGCGAUGaaGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 49883 0.68 0.4945
Target:  5'- gGGCcgGACGGUGCaGggGCgUCCgGCGc -3'
miRNA:   3'- -CCGuaCUGCCGCG-CgaUGaAGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 49671 0.72 0.323886
Target:  5'- cGGCAUGgggauggucgGCGGCGCGCgcaacCUgaaCCGCGa -3'
miRNA:   3'- -CCGUAC----------UGCCGCGCGau---GAag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49329 0.7 0.408056
Target:  5'- gGGCAUGACcgacgagcaGGCGCGCgcCgcgCUCGCu -3'
miRNA:   3'- -CCGUACUG---------CCGCGCGauGaa-GGGCGu -5'
24030 3' -57.4 NC_005262.1 + 49221 0.7 0.381404
Target:  5'- gGGCGgccucGGCGGCGCGCag--UCCgCGCGc -3'
miRNA:   3'- -CCGUa----CUGCCGCGCGaugaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 49149 0.66 0.642045
Target:  5'- cGGCAcgGugGGCGUGCaggccGCaUCggCCGCAg -3'
miRNA:   3'- -CCGUa-CugCCGCGCGa----UGaAG--GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 48487 0.7 0.399043
Target:  5'- gGGCAcgGGCGGCGCGacgGCag-CCGCAg -3'
miRNA:   3'- -CCGUa-CUGCCGCGCga-UGaagGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 48442 0.69 0.435842
Target:  5'- cGGCAUGACcacGCGCGCguaugCCgCGCGg -3'
miRNA:   3'- -CCGUACUGc--CGCGCGaugaaGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 46923 0.66 0.624834
Target:  5'- aGCAcGcCGGCGCGCUuuucucggcgagcgcGCgggCCUGCAc -3'
miRNA:   3'- cCGUaCuGCCGCGCGA---------------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 46523 0.68 0.514849
Target:  5'- cGGCGcgGGCGGCGCGgCggGCc-CCUGCGg -3'
miRNA:   3'- -CCGUa-CUGCCGCGC-Ga-UGaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 46390 0.68 0.514849
Target:  5'- aGGCc-GAacaGGCGCGCcucgucggGCUgggCCCGCAa -3'
miRNA:   3'- -CCGuaCUg--CCGCGCGa-------UGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 45778 0.67 0.566009
Target:  5'- cGGCAUcgcggcgaagggcGGCGGCGUGCUGauccaggaCCGCu -3'
miRNA:   3'- -CCGUA-------------CUGCCGCGCGAUgaag----GGCGu -5'
24030 3' -57.4 NC_005262.1 + 44320 0.66 0.620532
Target:  5'- cGGguUGA-GGCGCGUcaccgguCUggugCCCGCAa -3'
miRNA:   3'- -CCguACUgCCGCGCGau-----GAa---GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 42635 0.7 0.426458
Target:  5'- cGGCAUGAUGGC-CGCc---UUCCGCGg -3'
miRNA:   3'- -CCGUACUGCCGcGCGaugaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 41126 0.66 0.620532
Target:  5'- cGCGUcACGGCGCGCUcggacgacACgUUCaCCGUg -3'
miRNA:   3'- cCGUAcUGCCGCGCGA--------UG-AAG-GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.