Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24030 | 3' | -57.4 | NC_005262.1 | + | 40978 | 0.71 | 0.355939 |
Target: 5'- cGGCGUcggguuucuggcGGCGGCGCucGCUGCUgauggCaCCGCGa -3' miRNA: 3'- -CCGUA------------CUGCCGCG--CGAUGAa----G-GGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 36892 | 0.66 | 0.642045 |
Target: 5'- cGCA-GACGaaGCGgacgcucaagcuCUACUUCCCGCGu -3' miRNA: 3'- cCGUaCUGCcgCGC------------GAUGAAGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 35719 | 0.68 | 0.4945 |
Target: 5'- cGGCggGACGGCcaCGCUGa-UCCuCGCAu -3' miRNA: 3'- -CCGuaCUGCCGc-GCGAUgaAGG-GCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 35092 | 0.71 | 0.339638 |
Target: 5'- uGGUAcgGACGGgccCGCGCUGCUgCCCGg- -3' miRNA: 3'- -CCGUa-CUGCC---GCGCGAUGAaGGGCgu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 34496 | 0.71 | 0.331693 |
Target: 5'- cGCGcGGCGGCGCGCgACUUCU-GCGa -3' miRNA: 3'- cCGUaCUGCCGCGCGaUGAAGGgCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 33653 | 0.7 | 0.390158 |
Target: 5'- aGGC-UGACGaGCGCGCcucGCUggUCgCCGCGu -3' miRNA: 3'- -CCGuACUGC-CGCGCGa--UGA--AG-GGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 32499 | 0.75 | 0.206429 |
Target: 5'- cGGCAgcGAUGGCGgGCUcgUUCCCGUAg -3' miRNA: 3'- -CCGUa-CUGCCGCgCGAugAAGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 32421 | 0.66 | 0.661379 |
Target: 5'- aGGCGaucacgccugccUGACGGCccaugaacagcgcacGCGCUGCcucgacguucgcgCCCGCGc -3' miRNA: 3'- -CCGU------------ACUGCCG---------------CGCGAUGaa-----------GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 30944 | 1.11 | 0.000543 |
Target: 5'- cGGCAUGACGGCGCGCUACUUCCCGCAg -3' miRNA: 3'- -CCGUACUGCCGCGCGAUGAAGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 28585 | 0.67 | 0.567068 |
Target: 5'- cGGCAUGcccuACGGCGUGauccGCUUCaugCGCGg -3' miRNA: 3'- -CCGUAC----UGCCGCGCga--UGAAGg--GCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 26400 | 0.66 | 0.631288 |
Target: 5'- gGGCAUccagcaGACGcGCGaCGCg--UUCCCGCu -3' miRNA: 3'- -CCGUA------CUGC-CGC-GCGaugAAGGGCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 26000 | 0.67 | 0.577691 |
Target: 5'- cGCGUGGCGacguaccauGCGCGCUGCU--CgGCAu -3' miRNA: 3'- cCGUACUGC---------CGCGCGAUGAagGgCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 25119 | 0.68 | 0.525152 |
Target: 5'- aGG-AUGAgcUGGCGCGCUGCUUgUCCGa- -3' miRNA: 3'- -CCgUACU--GCCGCGCGAUGAA-GGGCgu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 24928 | 0.71 | 0.34772 |
Target: 5'- aGGCAUGGCGGgaUGCGC-ACaUgCCGCGc -3' miRNA: 3'- -CCGUACUGCC--GCGCGaUGaAgGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 24300 | 0.68 | 0.4945 |
Target: 5'- cGGCGUGcCGGCGCaGCgucgcgGCUg-CCGCc -3' miRNA: 3'- -CCGUACuGCCGCG-CGa-----UGAagGGCGu -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 23636 | 0.67 | 0.599058 |
Target: 5'- cGGCG-GGCGGUuggucagucuGCGCgguCcUCCCGCGc -3' miRNA: 3'- -CCGUaCUGCCG----------CGCGau-GaAGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 23359 | 0.75 | 0.185914 |
Target: 5'- cGGCGUGAa-GCGCGCggcgGCgaaggCCCGCAa -3' miRNA: 3'- -CCGUACUgcCGCGCGa---UGaa---GGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 23005 | 0.68 | 0.514849 |
Target: 5'- uGGCGUcGGCGaGCGCGUaGCagucUUCCGCGa -3' miRNA: 3'- -CCGUA-CUGC-CGCGCGaUGa---AGGGCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 22813 | 0.7 | 0.399043 |
Target: 5'- cGGCAUGugGcucCGCGaCUACUUCgCgGCGa -3' miRNA: 3'- -CCGUACugCc--GCGC-GAUGAAG-GgCGU- -5' |
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24030 | 3' | -57.4 | NC_005262.1 | + | 17169 | 0.66 | 0.620532 |
Target: 5'- cGGCAaGGCcGCGCGCgaggACgcgaCCGCGu -3' miRNA: 3'- -CCGUaCUGcCGCGCGa---UGaag-GGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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