miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 42635 0.7 0.426458
Target:  5'- cGGCAUGAUGGC-CGCc---UUCCGCGg -3'
miRNA:   3'- -CCGUACUGCCGcGCGaugaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 61457 0.7 0.381404
Target:  5'- aGGCGgcgGACGGCgaaGCGCUAgacgacauCUUCgCGCGg -3'
miRNA:   3'- -CCGUa--CUGCCG---CGCGAU--------GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49221 0.7 0.381404
Target:  5'- gGGCGgccucGGCGGCGCGCag--UCCgCGCGc -3'
miRNA:   3'- -CCGUa----CUGCCGCGCGaugaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 33653 0.7 0.390158
Target:  5'- aGGC-UGACGaGCGCGCcucGCUggUCgCCGCGu -3'
miRNA:   3'- -CCGuACUGC-CGCGCGa--UGA--AG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 22813 0.7 0.399043
Target:  5'- cGGCAUGugGcucCGCGaCUACUUCgCgGCGa -3'
miRNA:   3'- -CCGUACugCc--GCGC-GAUGAAG-GgCGU- -5'
24030 3' -57.4 NC_005262.1 + 48487 0.7 0.399043
Target:  5'- gGGCAcgGGCGGCGCGacgGCag-CCGCAg -3'
miRNA:   3'- -CCGUa-CUGCCGCGCga-UGaagGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49329 0.7 0.408056
Target:  5'- gGGCAUGACcgacgagcaGGCGCGCgcCgcgCUCGCu -3'
miRNA:   3'- -CCGUACUG---------CCGCGCGauGaa-GGGCGu -5'
24030 3' -57.4 NC_005262.1 + 61714 0.7 0.408056
Target:  5'- gGGUucgcuCGGCGCGCUcugcuuACUUCgCCGCGu -3'
miRNA:   3'- -CCGuacu-GCCGCGCGA------UGAAG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12554 0.7 0.417195
Target:  5'- cGGCAggucgcGGCGGCGCucgucgagcuGCUGCUgccgCCgGCGa -3'
miRNA:   3'- -CCGUa-----CUGCCGCG----------CGAUGAa---GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 59696 0.7 0.380535
Target:  5'- cGGCGUGccgccacGCGG-GCGCUACgucgCCgGCAa -3'
miRNA:   3'- -CCGUAC-------UGCCgCGCGAUGaa--GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 58919 0.71 0.372781
Target:  5'- cGGCGgcccgaccGAUGGCGCGC-GCUUCUCGg- -3'
miRNA:   3'- -CCGUa-------CUGCCGCGCGaUGAAGGGCgu -5'
24030 3' -57.4 NC_005262.1 + 40978 0.71 0.355939
Target:  5'- cGGCGUcggguuucuggcGGCGGCGCucGCUGCUgauggCaCCGCGa -3'
miRNA:   3'- -CCGUA------------CUGCCGCG--CGAUGAa----G-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 23359 0.75 0.185914
Target:  5'- cGGCGUGAa-GCGCGCggcgGCgaaggCCCGCAa -3'
miRNA:   3'- -CCGUACUgcCGCGCGa---UGaa---GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 7538 0.73 0.266371
Target:  5'- cGGCGcGuCGGCGCGCUcgacgacaucCUUCCCGUg -3'
miRNA:   3'- -CCGUaCuGCCGCGCGAu---------GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 60679 0.73 0.273083
Target:  5'- cGGCAUGcUGGCGaCGCUggGCUUCUuCGCGg -3'
miRNA:   3'- -CCGUACuGCCGC-GCGA--UGAAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 63179 0.72 0.286914
Target:  5'- gGGCGUGugGGUgcgccagaagcaGCGCUAUgacaCCUGCAu -3'
miRNA:   3'- -CCGUACugCCG------------CGCGAUGaa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49671 0.72 0.323886
Target:  5'- cGGCAUGgggauggucgGCGGCGCGCgcaacCUgaaCCGCGa -3'
miRNA:   3'- -CCGUAC----------UGCCGCGCGau---GAag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 34496 0.71 0.331693
Target:  5'- cGCGcGGCGGCGCGCgACUUCU-GCGa -3'
miRNA:   3'- cCGUaCUGCCGCGCGaUGAAGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 4904 0.71 0.346906
Target:  5'- cGGCGUGACGuCGgGCaguuUGCUcucgaugUCCCGCAc -3'
miRNA:   3'- -CCGUACUGCcGCgCG----AUGA-------AGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 24928 0.71 0.34772
Target:  5'- aGGCAUGGCGGgaUGCGC-ACaUgCCGCGc -3'
miRNA:   3'- -CCGUACUGCC--GCGCGaUGaAgGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.