miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 61714 0.7 0.408056
Target:  5'- gGGUucgcuCGGCGCGCUcugcuuACUUCgCCGCGu -3'
miRNA:   3'- -CCGuacu-GCCGCGCGA------UGAAG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49329 0.7 0.408056
Target:  5'- gGGCAUGACcgacgagcaGGCGCGCgcCgcgCUCGCu -3'
miRNA:   3'- -CCGUACUG---------CCGCGCGauGaa-GGGCGu -5'
24030 3' -57.4 NC_005262.1 + 48487 0.7 0.399043
Target:  5'- gGGCAcgGGCGGCGCGacgGCag-CCGCAg -3'
miRNA:   3'- -CCGUa-CUGCCGCGCga-UGaagGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 22813 0.7 0.399043
Target:  5'- cGGCAUGugGcucCGCGaCUACUUCgCgGCGa -3'
miRNA:   3'- -CCGUACugCc--GCGC-GAUGAAG-GgCGU- -5'
24030 3' -57.4 NC_005262.1 + 33653 0.7 0.390158
Target:  5'- aGGC-UGACGaGCGCGCcucGCUggUCgCCGCGu -3'
miRNA:   3'- -CCGuACUGC-CGCGCGa--UGA--AG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49221 0.7 0.381404
Target:  5'- gGGCGgccucGGCGGCGCGCag--UCCgCGCGc -3'
miRNA:   3'- -CCGUa----CUGCCGCGCGaugaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 61457 0.7 0.381404
Target:  5'- aGGCGgcgGACGGCgaaGCGCUAgacgacauCUUCgCGCGg -3'
miRNA:   3'- -CCGUa--CUGCCG---CGCGAU--------GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 58297 0.66 0.620532
Target:  5'- uGGUAcgGGCGGCGcCGCU-CU--CCGCAg -3'
miRNA:   3'- -CCGUa-CUGCCGC-GCGAuGAagGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 54929 0.66 0.620532
Target:  5'- aGCcgGuCGGCGCGCUGCgugUCgGUc -3'
miRNA:   3'- cCGuaCuGCCGCGCGAUGaa-GGgCGu -5'
24030 3' -57.4 NC_005262.1 + 6596 0.66 0.609786
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCgaGCGg -3'
miRNA:   3'- -CCGUaCU-GCCGCGCGAUga--AGggCGU- -5'
24030 3' -57.4 NC_005262.1 + 23636 0.67 0.599058
Target:  5'- cGGCG-GGCGGUuggucagucuGCGCgguCcUCCCGCGc -3'
miRNA:   3'- -CCGUaCUGCCG----------CGCGau-GaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 58659 0.67 0.599058
Target:  5'- -cCAUGcCGGCGUGCcgaucaGCUUCUCGCc -3'
miRNA:   3'- ccGUACuGCCGCGCGa-----UGAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 46923 0.66 0.624834
Target:  5'- aGCAcGcCGGCGCGCUuuucucggcgagcgcGCgggCCUGCAc -3'
miRNA:   3'- cCGUaCuGCCGCGCGA---------------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 10580 0.66 0.631288
Target:  5'- uGGCcgccAUGcUGGCGCuGCUGCUggUCgCCGCu -3'
miRNA:   3'- -CCG----UACuGCCGCG-CGAUGA--AG-GGCGu -5'
24030 3' -57.4 NC_005262.1 + 59716 0.66 0.652793
Target:  5'- aGGagaGACuGGCGCGCgagguuCUUCUCGCc -3'
miRNA:   3'- -CCguaCUG-CCGCGCGau----GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 297 0.66 0.652793
Target:  5'- cGGCAUGcucgUGcGCGCGCUGCggaucgUCaCCgGCAc -3'
miRNA:   3'- -CCGUACu---GC-CGCGCGAUGa-----AG-GG-CGU- -5'
24030 3' -57.4 NC_005262.1 + 54533 0.66 0.652793
Target:  5'- uGCGcUGAuacuuccgguCGGCGCGCgcgGCggCCUGCGc -3'
miRNA:   3'- cCGU-ACU----------GCCGCGCGa--UGaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 32421 0.66 0.661379
Target:  5'- aGGCGaucacgccugccUGACGGCccaugaacagcgcacGCGCUGCcucgacguucgcgCCCGCGc -3'
miRNA:   3'- -CCGU------------ACUGCCG---------------CGCGAUGaa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 17087 0.66 0.663523
Target:  5'- aGCAcGACGaGCGCGCgcuCggCCgGCGg -3'
miRNA:   3'- cCGUaCUGC-CGCGCGau-GaaGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 32499 0.75 0.206429
Target:  5'- cGGCAgcGAUGGCGgGCUcgUUCCCGUAg -3'
miRNA:   3'- -CCGUa-CUGCCGCgCGAugAAGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.