miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 35092 0.71 0.339638
Target:  5'- uGGUAcgGACGGgccCGCGCUGCUgCCCGg- -3'
miRNA:   3'- -CCGUa-CUGCC---GCGCGAUGAaGGGCgu -5'
24030 3' -57.4 NC_005262.1 + 32499 0.75 0.206429
Target:  5'- cGGCAgcGAUGGCGgGCUcgUUCCCGUAg -3'
miRNA:   3'- -CCGUa-CUGCCGCgCGAugAAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 16970 0.67 0.566009
Target:  5'- cGGUGUGGugcggccCGGCGCGCgGCcgggcgCCUGCAu -3'
miRNA:   3'- -CCGUACU-------GCCGCGCGaUGaa----GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 63404 0.67 0.567068
Target:  5'- cGGCGacGCGGCGCGCgugUUCCaCGUc -3'
miRNA:   3'- -CCGUacUGCCGCGCGaugAAGG-GCGu -5'
24030 3' -57.4 NC_005262.1 + 50407 0.67 0.567068
Target:  5'- uGCGcGGCGG-GCGCUGCggCCgGCu -3'
miRNA:   3'- cCGUaCUGCCgCGCGAUGaaGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 17087 0.66 0.663523
Target:  5'- aGCAcGACGaGCGCGCgcuCggCCgGCGg -3'
miRNA:   3'- cCGUaCUGC-CGCGCGau-GaaGGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 32421 0.66 0.661379
Target:  5'- aGGCGaucacgccugccUGACGGCccaugaacagcgcacGCGCUGCcucgacguucgcgCCCGCGc -3'
miRNA:   3'- -CCGU------------ACUGCCG---------------CGCGAUGaa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 54533 0.66 0.652793
Target:  5'- uGCGcUGAuacuuccgguCGGCGCGCgcgGCggCCUGCGc -3'
miRNA:   3'- cCGU-ACU----------GCCGCGCGa--UGaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 297 0.66 0.652793
Target:  5'- cGGCAUGcucgUGcGCGCGCUGCggaucgUCaCCgGCAc -3'
miRNA:   3'- -CCGUACu---GC-CGCGCGAUGa-----AG-GG-CGU- -5'
24030 3' -57.4 NC_005262.1 + 59716 0.66 0.652793
Target:  5'- aGGagaGACuGGCGCGCgagguuCUUCUCGCc -3'
miRNA:   3'- -CCguaCUG-CCGCGCGau----GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 10580 0.66 0.631288
Target:  5'- uGGCcgccAUGcUGGCGCuGCUGCUggUCgCCGCu -3'
miRNA:   3'- -CCG----UACuGCCGCG-CGAUGA--AG-GGCGu -5'
24030 3' -57.4 NC_005262.1 + 46923 0.66 0.624834
Target:  5'- aGCAcGcCGGCGCGCUuuucucggcgagcgcGCgggCCUGCAc -3'
miRNA:   3'- cCGUaCuGCCGCGCGA---------------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 58297 0.66 0.620532
Target:  5'- uGGUAcgGGCGGCGcCGCU-CU--CCGCAg -3'
miRNA:   3'- -CCGUa-CUGCCGC-GCGAuGAagGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 54929 0.66 0.620532
Target:  5'- aGCcgGuCGGCGCGCUGCgugUCgGUc -3'
miRNA:   3'- cCGuaCuGCCGCGCGAUGaa-GGgCGu -5'
24030 3' -57.4 NC_005262.1 + 6596 0.66 0.609786
Target:  5'- cGGCGaGGuCGGCGCGCUGaucgUCgaGCGg -3'
miRNA:   3'- -CCGUaCU-GCCGCGCGAUga--AGggCGU- -5'
24030 3' -57.4 NC_005262.1 + 23636 0.67 0.599058
Target:  5'- cGGCG-GGCGGUuggucagucuGCGCgguCcUCCCGCGc -3'
miRNA:   3'- -CCGUaCUGCCG----------CGCGau-GaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 58659 0.67 0.599058
Target:  5'- -cCAUGcCGGCGUGCcgaucaGCUUCUCGCc -3'
miRNA:   3'- ccGUACuGCCGCGCGa-----UGAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 26000 0.67 0.577691
Target:  5'- cGCGUGGCGacguaccauGCGCGCUGCU--CgGCAu -3'
miRNA:   3'- cCGUACUGC---------CGCGCGAUGAagGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 55057 0.67 0.567068
Target:  5'- cGCGccaGAUGGCGCGCUucugguUUUCgCGCAg -3'
miRNA:   3'- cCGUa--CUGCCGCGCGAu-----GAAGgGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12949 0.66 0.663523
Target:  5'- -cCGUGcACGGCaGCGCgaaGCUcggcacgacgguUCCCGCGa -3'
miRNA:   3'- ccGUAC-UGCCG-CGCGa--UGA------------AGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.