miRNA display CGI


Results 41 - 60 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 49671 0.72 0.323886
Target:  5'- cGGCAUGgggauggucgGCGGCGCGCgcaacCUgaaCCGCGa -3'
miRNA:   3'- -CCGUAC----------UGCCGCGCGau---GAag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 7538 0.73 0.266371
Target:  5'- cGGCGcGuCGGCGCGCUcgacgacaucCUUCCCGUg -3'
miRNA:   3'- -CCGUaCuGCCGCGCGAu---------GAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 12639 0.66 0.660306
Target:  5'- cGGCAccgUGaagaagaagcgcgcGCGGCGCGCgGCgaacCCUGCGc -3'
miRNA:   3'- -CCGU---AC--------------UGCCGCGCGaUGaa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 52150 0.66 0.642045
Target:  5'- uGGgA-GGCGGCGCGCaACUacCCCGg- -3'
miRNA:   3'- -CCgUaCUGCCGCGCGaUGAa-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 49149 0.66 0.642045
Target:  5'- cGGCAcgGugGGCGUGCaggccGCaUCggCCGCAg -3'
miRNA:   3'- -CCGUa-CugCCGCGCGa----UGaAG--GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 48442 0.69 0.435842
Target:  5'- cGGCAUGACcacGCGCGCguaugCCgCGCGg -3'
miRNA:   3'- -CCGUACUGc--CGCGCGaugaaGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 46390 0.68 0.514849
Target:  5'- aGGCc-GAacaGGCGCGCcucgucggGCUgggCCCGCAa -3'
miRNA:   3'- -CCGuaCUg--CCGCGCGa-------UGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 25119 0.68 0.525152
Target:  5'- aGG-AUGAgcUGGCGCGCUGCUUgUCCGa- -3'
miRNA:   3'- -CCgUACU--GCCGCGCGAUGAA-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 62933 0.68 0.525152
Target:  5'- uGGCAaagGACGagcgcgauuuGCGCGCgucGCUUCCgGCc -3'
miRNA:   3'- -CCGUa--CUGC----------CGCGCGa--UGAAGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 14213 0.68 0.525152
Target:  5'- cGGCAcUGACGGCGgGCgcgAUgucgaCCaCGCAc -3'
miRNA:   3'- -CCGU-ACUGCCGCgCGa--UGaa---GG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 62726 0.67 0.545981
Target:  5'- cGCAcccUGAuCGGCGCGCUgGCggucagCgCCGCAg -3'
miRNA:   3'- cCGU---ACU-GCCGCGCGA-UGaa----G-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 45778 0.67 0.566009
Target:  5'- cGGCAUcgcggcgaagggcGGCGGCGUGCUGauccaggaCCGCu -3'
miRNA:   3'- -CCGUA-------------CUGCCGCGCGAUgaag----GGCGu -5'
24030 3' -57.4 NC_005262.1 + 42635 0.7 0.426458
Target:  5'- cGGCAUGAUGGC-CGCc---UUCCGCGg -3'
miRNA:   3'- -CCGUACUGCCGcGCGaugaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 12554 0.7 0.417195
Target:  5'- cGGCAggucgcGGCGGCGCucgucgagcuGCUGCUgccgCCgGCGa -3'
miRNA:   3'- -CCGUa-----CUGCCGCG----------CGAUGAa---GGgCGU- -5'
24030 3' -57.4 NC_005262.1 + 33653 0.7 0.390158
Target:  5'- aGGC-UGACGaGCGCGCcucGCUggUCgCCGCGu -3'
miRNA:   3'- -CCGuACUGC-CGCGCGa--UGA--AG-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 4573 0.68 0.502597
Target:  5'- cGCGccaGCGGCgGCGCUGCUcgggcgugagcgCCCGCAg -3'
miRNA:   3'- cCGUac-UGCCG-CGCGAUGAa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 49221 0.7 0.381404
Target:  5'- gGGCGgccucGGCGGCGCGCag--UCCgCGCGc -3'
miRNA:   3'- -CCGUa----CUGCCGCGCGaugaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 26400 0.66 0.631288
Target:  5'- gGGCAUccagcaGACGcGCGaCGCg--UUCCCGCu -3'
miRNA:   3'- -CCGUA------CUGC-CGC-GCGaugAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 9182 0.66 0.642045
Target:  5'- cGCAUGGCGGUcgGCGCagAUcagCCCGUc -3'
miRNA:   3'- cCGUACUGCCG--CGCGa-UGaa-GGGCGu -5'
24030 3' -57.4 NC_005262.1 + 36892 0.66 0.642045
Target:  5'- cGCA-GACGaaGCGgacgcucaagcuCUACUUCCCGCGu -3'
miRNA:   3'- cCGUaCUGCcgCGC------------GAUGAAGGGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.