miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 3' -57.4 NC_005262.1 + 42635 0.7 0.426458
Target:  5'- cGGCAUGAUGGC-CGCc---UUCCGCGg -3'
miRNA:   3'- -CCGUACUGCCGcGCGaugaAGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 48442 0.69 0.435842
Target:  5'- cGGCAUGACcacGCGCGCguaugCCgCGCGg -3'
miRNA:   3'- -CCGUACUGc--CGCGCGaugaaGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 26400 0.66 0.631288
Target:  5'- gGGCAUccagcaGACGcGCGaCGCg--UUCCCGCu -3'
miRNA:   3'- -CCGUA------CUGC-CGC-GCGaugAAGGGCGu -5'
24030 3' -57.4 NC_005262.1 + 51416 0.66 0.628061
Target:  5'- cGCGUGcucgGCGGCGCGCgcgaggGCgauaccgucacgacgUCCGCAg -3'
miRNA:   3'- cCGUAC----UGCCGCGCGa-----UGaa-------------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 41126 0.66 0.620532
Target:  5'- cGCGUcACGGCGCGCUcggacgacACgUUCaCCGUg -3'
miRNA:   3'- cCGUAcUGCCGCGCGA--------UG-AAG-GGCGu -5'
24030 3' -57.4 NC_005262.1 + 17169 0.66 0.620532
Target:  5'- cGGCAaGGCcGCGCGCgaggACgcgaCCGCGu -3'
miRNA:   3'- -CCGUaCUGcCGCGCGa---UGaag-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 5049 0.66 0.620532
Target:  5'- cGGCGccUGAuCGGCGgGCagg--CCCGCGg -3'
miRNA:   3'- -CCGU--ACU-GCCGCgCGaugaaGGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 44320 0.66 0.620532
Target:  5'- cGGguUGA-GGCGCGUcaccgguCUggugCCCGCAa -3'
miRNA:   3'- -CCguACUgCCGCGCGau-----GAa---GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 57941 0.67 0.599058
Target:  5'- cGGCAUucaacguggagGGCGcgaGCGCGCUugaaauugGCgcgCCCGCAu -3'
miRNA:   3'- -CCGUA-----------CUGC---CGCGCGA--------UGaa-GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 53063 0.67 0.599058
Target:  5'- cGCGcUGAcCGGCGCgaucgcgaaGCUGCUguaUCCGCAg -3'
miRNA:   3'- cCGU-ACU-GCCGCG---------CGAUGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 28585 0.67 0.567068
Target:  5'- cGGCAUGcccuACGGCGUGauccGCUUCaugCGCGg -3'
miRNA:   3'- -CCGUAC----UGCCGCGCga--UGAAGg--GCGU- -5'
24030 3' -57.4 NC_005262.1 + 45778 0.67 0.566009
Target:  5'- cGGCAUcgcggcgaagggcGGCGGCGUGCUGauccaggaCCGCu -3'
miRNA:   3'- -CCGUA-------------CUGCCGCGCGAUgaag----GGCGu -5'
24030 3' -57.4 NC_005262.1 + 62726 0.67 0.545981
Target:  5'- cGCAcccUGAuCGGCGCGCUgGCggucagCgCCGCAg -3'
miRNA:   3'- cCGU---ACU-GCCGCGCGA-UGaa----G-GGCGU- -5'
24030 3' -57.4 NC_005262.1 + 14213 0.68 0.525152
Target:  5'- cGGCAcUGACGGCGgGCgcgAUgucgaCCaCGCAc -3'
miRNA:   3'- -CCGU-ACUGCCGCgCGa--UGaa---GG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 62933 0.68 0.525152
Target:  5'- uGGCAaagGACGagcgcgauuuGCGCGCgucGCUUCCgGCc -3'
miRNA:   3'- -CCGUa--CUGC----------CGCGCGa--UGAAGGgCGu -5'
24030 3' -57.4 NC_005262.1 + 25119 0.68 0.525152
Target:  5'- aGG-AUGAgcUGGCGCGCUGCUUgUCCGa- -3'
miRNA:   3'- -CCgUACU--GCCGCGCGAUGAA-GGGCgu -5'
24030 3' -57.4 NC_005262.1 + 46390 0.68 0.514849
Target:  5'- aGGCc-GAacaGGCGCGCcucgucggGCUgggCCCGCAa -3'
miRNA:   3'- -CCGuaCUg--CCGCGCGa-------UGAa--GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 4573 0.68 0.502597
Target:  5'- cGCGccaGCGGCgGCGCUGCUcgggcgugagcgCCCGCAg -3'
miRNA:   3'- cCGUac-UGCCG-CGCGAUGAa-----------GGGCGU- -5'
24030 3' -57.4 NC_005262.1 + 35719 0.68 0.4945
Target:  5'- cGGCggGACGGCcaCGCUGa-UCCuCGCAu -3'
miRNA:   3'- -CCGuaCUGCCGc-GCGAUgaAGG-GCGU- -5'
24030 3' -57.4 NC_005262.1 + 30944 1.11 0.000543
Target:  5'- cGGCAUGACGGCGCGCUACUUCCCGCAg -3'
miRNA:   3'- -CCGUACUGCCGCGCGAUGAAGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.