miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24030 5' -52.8 NC_005262.1 + 48365 0.66 0.884107
Target:  5'- -cUGCuGGcGGcCGGCUAUCAGUcggguuacgACCg -3'
miRNA:   3'- cuAUGuCCuCCuGCCGAUGGUCA---------UGG- -5'
24030 5' -52.8 NC_005262.1 + 44169 0.66 0.868539
Target:  5'- --gGCAGGAGcGCGGCgGCgAGcucaaUGCCg -3'
miRNA:   3'- cuaUGUCCUCcUGCCGaUGgUC-----AUGG- -5'
24030 5' -52.8 NC_005262.1 + 58208 0.66 0.860378
Target:  5'- -cUGC-GGAGaGCGGCgccGCCcGUACCa -3'
miRNA:   3'- cuAUGuCCUCcUGCCGa--UGGuCAUGG- -5'
24030 5' -52.8 NC_005262.1 + 13018 0.66 0.860378
Target:  5'- --cGCAGGAGcGCgccaagGGCUACgCGGUGCg -3'
miRNA:   3'- cuaUGUCCUCcUG------CCGAUG-GUCAUGg -5'
24030 5' -52.8 NC_005262.1 + 58602 0.66 0.860378
Target:  5'- --cACGGGcAGGGCGGUcgACUGGUucagguucGCCg -3'
miRNA:   3'- cuaUGUCC-UCCUGCCGa-UGGUCA--------UGG- -5'
24030 5' -52.8 NC_005262.1 + 5967 0.67 0.834477
Target:  5'- aAUGUAGGGGGuCGGCUuuuGCCGGccgGCUg -3'
miRNA:   3'- cUAUGUCCUCCuGCCGA---UGGUCa--UGG- -5'
24030 5' -52.8 NC_005262.1 + 15923 0.67 0.829056
Target:  5'- cGAUGCgccgcagagcgAGGAGGAagugcugcacacgcuCGGCUuCCGGUcgACCu -3'
miRNA:   3'- -CUAUG-----------UCCUCCU---------------GCCGAuGGUCA--UGG- -5'
24030 5' -52.8 NC_005262.1 + 15908 0.67 0.8254
Target:  5'- -cUGCuGGAucgcgagcgcGaGAUGGCUuuuGCCGGUGCCg -3'
miRNA:   3'- cuAUGuCCU----------C-CUGCCGA---UGGUCAUGG- -5'
24030 5' -52.8 NC_005262.1 + 27978 0.67 0.806637
Target:  5'- aGGUACuugAGGAGGGCGGUcuugGCuCGGccGCCu -3'
miRNA:   3'- -CUAUG---UCCUCCUGCCGa---UG-GUCa-UGG- -5'
24030 5' -52.8 NC_005262.1 + 20189 0.67 0.796972
Target:  5'- --gACAGGAcGuCGGagACCGGUGCCu -3'
miRNA:   3'- cuaUGUCCUcCuGCCgaUGGUCAUGG- -5'
24030 5' -52.8 NC_005262.1 + 45942 0.67 0.796972
Target:  5'- -cUACGucGAGGACGGC-AUCgAGUACCu -3'
miRNA:   3'- cuAUGUc-CUCCUGCCGaUGG-UCAUGG- -5'
24030 5' -52.8 NC_005262.1 + 41443 0.68 0.787132
Target:  5'- --cACGGGcGGcGCGGCUACCGuUACg -3'
miRNA:   3'- cuaUGUCCuCC-UGCCGAUGGUcAUGg -5'
24030 5' -52.8 NC_005262.1 + 63350 0.68 0.787132
Target:  5'- --aGCAGGcGG-CGGCUGCCacgauGGcGCCg -3'
miRNA:   3'- cuaUGUCCuCCuGCCGAUGG-----UCaUGG- -5'
24030 5' -52.8 NC_005262.1 + 63675 0.68 0.777129
Target:  5'- ---cCGGcGGGGGCGGCggaGCCAGacacgcUACCg -3'
miRNA:   3'- cuauGUC-CUCCUGCCGa--UGGUC------AUGG- -5'
24030 5' -52.8 NC_005262.1 + 46631 0.68 0.777129
Target:  5'- --cGCGGGA--GCGGCgGCCGGcGCCg -3'
miRNA:   3'- cuaUGUCCUccUGCCGaUGGUCaUGG- -5'
24030 5' -52.8 NC_005262.1 + 27244 0.68 0.777129
Target:  5'- cAUGCGGccGGugugcCGGC-ACCAGUACCa -3'
miRNA:   3'- cUAUGUCcuCCu----GCCGaUGGUCAUGG- -5'
24030 5' -52.8 NC_005262.1 + 23942 0.68 0.77612
Target:  5'- --gACGGGcggcaccggcaAGGGCGGCgUGCCGGccuacguUGCCg -3'
miRNA:   3'- cuaUGUCC-----------UCCUGCCG-AUGGUC-------AUGG- -5'
24030 5' -52.8 NC_005262.1 + 23826 0.68 0.745203
Target:  5'- --cGCAGGuacucggcaacguAGGcCGGCacgccgcccuUGCCGGUGCCg -3'
miRNA:   3'- cuaUGUCC-------------UCCuGCCG----------AUGGUCAUGG- -5'
24030 5' -52.8 NC_005262.1 + 22229 0.69 0.73571
Target:  5'- cGAUGCGGGcAGccGCGGCgGCCAGacgauUGCCg -3'
miRNA:   3'- -CUAUGUCC-UCc-UGCCGaUGGUC-----AUGG- -5'
24030 5' -52.8 NC_005262.1 + 14445 0.69 0.703495
Target:  5'- -uUGCAGGAguucccGGACGGCUACaccgauGUcCCg -3'
miRNA:   3'- cuAUGUCCU------CCUGCCGAUGgu----CAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.