Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 14445 | 0.69 | 0.703495 |
|
Target: 5'- -uUGCAGGAguucccGGACGGCUACaccgauGUcCCg -3' miRNA: 3'- cuAUGUCCU------CCUGCCGAUGgu----CAuGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 35643 | 0.7 | 0.681646 |
|
Target: 5'- --cGCGGcGGGcGAUgGGCUACuCGGUGCCg -3' miRNA: 3'- cuaUGUC-CUC-CUG-CCGAUG-GUCAUGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 59066 | 0.7 | 0.670644 |
|
Target: 5'- --cGCGGGAGGcgugaGGCcGCCGGcgGCCg -3' miRNA: 3'- cuaUGUCCUCCug---CCGaUGGUCa-UGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 49875 | 0.7 | 0.637461 |
|
Target: 5'- cGGUGCAGGGGcGuccggcGCGGCagcgGCCGGaGCCu -3' miRNA: 3'- -CUAUGUCCUC-C------UGCCGa---UGGUCaUGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 34408 | 0.71 | 0.57122 |
|
Target: 5'- uGAUAguGcAGGGCGGCgACC-GUGCCg -3' miRNA: 3'- -CUAUguCcUCCUGCCGaUGGuCAUGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 50457 | 0.73 | 0.506758 |
|
Target: 5'- --cGCgAGGAGGACGGCcGCaCGGUAUUc -3' miRNA: 3'- cuaUG-UCCUCCUGCCGaUG-GUCAUGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 14308 | 0.73 | 0.475688 |
|
Target: 5'- --gACGGGAGGGCGGCggaACC---GCCg -3' miRNA: 3'- cuaUGUCCUCCUGCCGa--UGGucaUGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 46093 | 0.76 | 0.328797 |
|
Target: 5'- ----uGGGAGGACGGCcgcGCCGcGUACCu -3' miRNA: 3'- cuaugUCCUCCUGCCGa--UGGU-CAUGG- -5' |
|||||||
| 24030 | 5' | -52.8 | NC_005262.1 | + | 30988 | 1.12 | 0.001381 |
|
Target: 5'- uGAUACAGGAGGACGGCUACCAGUACCu -3' miRNA: 3'- -CUAUGUCCUCCUGCCGAUGGUCAUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home