Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 30988 | 1.12 | 0.001381 |
Target: 5'- uGAUACAGGAGGACGGCUACCAGUACCu -3' miRNA: 3'- -CUAUGUCCUCCUGCCGAUGGUCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 48365 | 0.66 | 0.884107 |
Target: 5'- -cUGCuGGcGGcCGGCUAUCAGUcggguuacgACCg -3' miRNA: 3'- cuAUGuCCuCCuGCCGAUGGUCA---------UGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 44169 | 0.66 | 0.868539 |
Target: 5'- --gGCAGGAGcGCGGCgGCgAGcucaaUGCCg -3' miRNA: 3'- cuaUGUCCUCcUGCCGaUGgUC-----AUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 58208 | 0.66 | 0.860378 |
Target: 5'- -cUGC-GGAGaGCGGCgccGCCcGUACCa -3' miRNA: 3'- cuAUGuCCUCcUGCCGa--UGGuCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 13018 | 0.66 | 0.860378 |
Target: 5'- --cGCAGGAGcGCgccaagGGCUACgCGGUGCg -3' miRNA: 3'- cuaUGUCCUCcUG------CCGAUG-GUCAUGg -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 5967 | 0.67 | 0.834477 |
Target: 5'- aAUGUAGGGGGuCGGCUuuuGCCGGccgGCUg -3' miRNA: 3'- cUAUGUCCUCCuGCCGA---UGGUCa--UGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 15923 | 0.67 | 0.829056 |
Target: 5'- cGAUGCgccgcagagcgAGGAGGAagugcugcacacgcuCGGCUuCCGGUcgACCu -3' miRNA: 3'- -CUAUG-----------UCCUCCU---------------GCCGAuGGUCA--UGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 45942 | 0.67 | 0.796972 |
Target: 5'- -cUACGucGAGGACGGC-AUCgAGUACCu -3' miRNA: 3'- cuAUGUc-CUCCUGCCGaUGG-UCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 20189 | 0.67 | 0.796972 |
Target: 5'- --gACAGGAcGuCGGagACCGGUGCCu -3' miRNA: 3'- cuaUGUCCUcCuGCCgaUGGUCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 41443 | 0.68 | 0.787132 |
Target: 5'- --cACGGGcGGcGCGGCUACCGuUACg -3' miRNA: 3'- cuaUGUCCuCC-UGCCGAUGGUcAUGg -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 46093 | 0.76 | 0.328797 |
Target: 5'- ----uGGGAGGACGGCcgcGCCGcGUACCu -3' miRNA: 3'- cuaugUCCUCCUGCCGa--UGGU-CAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 14308 | 0.73 | 0.475688 |
Target: 5'- --gACGGGAGGGCGGCggaACC---GCCg -3' miRNA: 3'- cuaUGUCCUCCUGCCGa--UGGucaUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 50457 | 0.73 | 0.506758 |
Target: 5'- --cGCgAGGAGGACGGCcGCaCGGUAUUc -3' miRNA: 3'- cuaUG-UCCUCCUGCCGaUG-GUCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 35643 | 0.7 | 0.681646 |
Target: 5'- --cGCGGcGGGcGAUgGGCUACuCGGUGCCg -3' miRNA: 3'- cuaUGUC-CUC-CUG-CCGAUG-GUCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 14445 | 0.69 | 0.703495 |
Target: 5'- -uUGCAGGAguucccGGACGGCUACaccgauGUcCCg -3' miRNA: 3'- cuAUGUCCU------CCUGCCGAUGgu----CAuGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 23826 | 0.68 | 0.745203 |
Target: 5'- --cGCAGGuacucggcaacguAGGcCGGCacgccgcccuUGCCGGUGCCg -3' miRNA: 3'- cuaUGUCC-------------UCCuGCCG----------AUGGUCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 34408 | 0.71 | 0.57122 |
Target: 5'- uGAUAguGcAGGGCGGCgACC-GUGCCg -3' miRNA: 3'- -CUAUguCcUCCUGCCGaUGGuCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 15908 | 0.67 | 0.8254 |
Target: 5'- -cUGCuGGAucgcgagcgcGaGAUGGCUuuuGCCGGUGCCg -3' miRNA: 3'- cuAUGuCCU----------C-CUGCCGA---UGGUCAUGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 27978 | 0.67 | 0.806637 |
Target: 5'- aGGUACuugAGGAGGGCGGUcuugGCuCGGccGCCu -3' miRNA: 3'- -CUAUG---UCCUCCUGCCGa---UG-GUCa-UGG- -5' |
|||||||
24030 | 5' | -52.8 | NC_005262.1 | + | 63350 | 0.68 | 0.787132 |
Target: 5'- --aGCAGGcGG-CGGCUGCCacgauGGcGCCg -3' miRNA: 3'- cuaUGUCCuCCuGCCGAUGG-----UCaUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home