miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24032 3' -58.8 NC_005262.1 + 37588 0.66 0.577565
Target:  5'- -cAGCGUcaaUGGUUCGaCCG-CCUCuGUCGa -3'
miRNA:   3'- uuUCGCA---ACCAGGC-GGCuGGAG-CGGC- -5'
24032 3' -58.8 NC_005262.1 + 43850 0.66 0.567024
Target:  5'- --cGCGgcGGUgCGCCGgcaggACCUCGgCGc -3'
miRNA:   3'- uuuCGCaaCCAgGCGGC-----UGGAGCgGC- -5'
24032 3' -58.8 NC_005262.1 + 49837 0.66 0.567024
Target:  5'- cGGGCGcgGGcgCCGCCGGCgUCGgUGc -3'
miRNA:   3'- uUUCGCaaCCa-GGCGGCUGgAGCgGC- -5'
24032 3' -58.8 NC_005262.1 + 60703 0.66 0.556533
Target:  5'- -cAGCGUgcgcaugGcGUUCGCCGugCccuguaUCGCCGg -3'
miRNA:   3'- uuUCGCAa------C-CAGGCGGCugG------AGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 12551 0.66 0.556533
Target:  5'- -cGGCGgcaGGUCgCGgCGGCgCUCGUCGa -3'
miRNA:   3'- uuUCGCaa-CCAG-GCgGCUG-GAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 30746 0.66 0.556533
Target:  5'- uGAAGaUGUcGG-CCGCCGAucgugaugccuaCCUCGCCu -3'
miRNA:   3'- -UUUC-GCAaCCaGGCGGCU------------GGAGCGGc -5'
24032 3' -58.8 NC_005262.1 + 5544 0.66 0.556533
Target:  5'- -cGGCGa-GGUUCGCCGcgaggucauGCCgCGCCGg -3'
miRNA:   3'- uuUCGCaaCCAGGCGGC---------UGGaGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 5612 0.66 0.546098
Target:  5'- -cGGCGUcgauGUUCG-CGACCUCGCCc -3'
miRNA:   3'- uuUCGCAac--CAGGCgGCUGGAGCGGc -5'
24032 3' -58.8 NC_005262.1 + 36563 0.67 0.5152
Target:  5'- --cGCGau-GUCCGCCaGCCUCGCgCGc -3'
miRNA:   3'- uuuCGCaacCAGGCGGcUGGAGCG-GC- -5'
24032 3' -58.8 NC_005262.1 + 9243 0.67 0.5152
Target:  5'- gAAGGCGccgGGugauccgcauUCCGaCCGGCCcggCGCCGg -3'
miRNA:   3'- -UUUCGCaa-CC----------AGGC-GGCUGGa--GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 38803 0.67 0.494999
Target:  5'- uGAGCGUcgGGUauUUGCUGcCUUCGCCGg -3'
miRNA:   3'- uUUCGCAa-CCA--GGCGGCuGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 59062 0.67 0.485034
Target:  5'- gGAGGCGUgaGG-CCGCCGGCg--GCCGg -3'
miRNA:   3'- -UUUCGCAa-CCaGGCGGCUGgagCGGC- -5'
24032 3' -58.8 NC_005262.1 + 6515 0.67 0.475166
Target:  5'- -cAGCG------CGCCGACCUCGCCGu -3'
miRNA:   3'- uuUCGCaaccagGCGGCUGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 42475 0.67 0.475166
Target:  5'- gAGAGgGUgacGGUCUGuCCGGCCU-GCCa -3'
miRNA:   3'- -UUUCgCAa--CCAGGC-GGCUGGAgCGGc -5'
24032 3' -58.8 NC_005262.1 + 60314 0.68 0.455737
Target:  5'- --uGCGguauUCCuucagcagcuuGCCGACCUCGCCGg -3'
miRNA:   3'- uuuCGCaaccAGG-----------CGGCUGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 40464 0.68 0.455737
Target:  5'- --cGCGgcagacaGG-CCGUCGACgUCGCCGa -3'
miRNA:   3'- uuuCGCaa-----CCaGGCGGCUGgAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 56379 0.68 0.446184
Target:  5'- cGAAGCcgcGGUucuUCGCCGACugCUCGCCGa -3'
miRNA:   3'- -UUUCGcaaCCA---GGCGGCUG--GAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 28411 0.68 0.442395
Target:  5'- cGAGCGgcacgugcucgaGGUCgaaucgggccgCGCCGugCUCGCCGu -3'
miRNA:   3'- uUUCGCaa----------CCAG-----------GCGGCugGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 30505 0.68 0.427421
Target:  5'- cAGGCGcacgagaUGGUCguCGCCGACCUgggcgaagcaaCGCCGa -3'
miRNA:   3'- uUUCGCa------ACCAG--GCGGCUGGA-----------GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 32829 0.68 0.427421
Target:  5'- --cGCGUcgcucacggagUGGUCgGCCGGCagcaCGCCGa -3'
miRNA:   3'- uuuCGCA-----------ACCAGgCGGCUGga--GCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.