miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24032 3' -58.8 NC_005262.1 + 31472 1.05 0.000969
Target:  5'- uAAAGCGUUGGUCCGCCGACCUCGCCGu -3'
miRNA:   3'- -UUUCGCAACCAGGCGGCUGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 63583 0.74 0.18286
Target:  5'- -uAGCGUgucUGGcUCCGCCGcCCcCGCCGg -3'
miRNA:   3'- uuUCGCA---ACC-AGGCGGCuGGaGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 57186 0.73 0.214198
Target:  5'- --uGCGUgccgUGGaacaugaucgggaagCCGCCGAUCUCGCCGa -3'
miRNA:   3'- uuuCGCA----ACCa--------------GGCGGCUGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 27967 0.7 0.349126
Target:  5'- gAGGGCGgucuUGGcUCgGCCG-CCUUGCCGc -3'
miRNA:   3'- -UUUCGCa---ACC-AGgCGGCuGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 32448 0.7 0.349126
Target:  5'- cGAAGCGgaGG-CCGuuGGCCgUGCCGu -3'
miRNA:   3'- -UUUCGCaaCCaGGCggCUGGaGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 45090 0.69 0.365616
Target:  5'- --cGUGUUGGcgUCCGCCG-CCU-GCCGc -3'
miRNA:   3'- uuuCGCAACC--AGGCGGCuGGAgCGGC- -5'
24032 3' -58.8 NC_005262.1 + 52692 0.69 0.37406
Target:  5'- cGAGCaGgaaGG-CCGCCGGCCgaCGCCGg -3'
miRNA:   3'- uUUCG-Caa-CCaGGCGGCUGGa-GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 45211 0.69 0.400173
Target:  5'- cAGGCGgcauGUCCGCCGGgCUCgGCCu -3'
miRNA:   3'- uUUCGCaac-CAGGCGGCUgGAG-CGGc -5'
24032 3' -58.8 NC_005262.1 + 43942 0.69 0.400173
Target:  5'- --cGCGccgaGGUCCuGCCGGCCacCGCCGc -3'
miRNA:   3'- uuuCGCaa--CCAGG-CGGCUGGa-GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 14115 0.69 0.400173
Target:  5'- uGGGCGUccagGGUCCGCCaagcGACUgcaCGCUGg -3'
miRNA:   3'- uUUCGCAa---CCAGGCGG----CUGGa--GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 32988 0.69 0.409132
Target:  5'- --cGCGUgcgacgCCGCCGGCUUgGCCGa -3'
miRNA:   3'- uuuCGCAacca--GGCGGCUGGAgCGGC- -5'
24032 3' -58.8 NC_005262.1 + 30505 0.68 0.427421
Target:  5'- cAGGCGcacgagaUGGUCguCGCCGACCUgggcgaagcaaCGCCGa -3'
miRNA:   3'- uUUCGCa------ACCAG--GCGGCUGGA-----------GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 32829 0.68 0.427421
Target:  5'- --cGCGUcgcucacggagUGGUCgGCCGGCagcaCGCCGa -3'
miRNA:   3'- uuuCGCA-----------ACCAGgCGGCUGga--GCGGC- -5'
24032 3' -58.8 NC_005262.1 + 28411 0.68 0.442395
Target:  5'- cGAGCGgcacgugcucgaGGUCgaaucgggccgCGCCGugCUCGCCGu -3'
miRNA:   3'- uUUCGCaa----------CCAG-----------GCGGCugGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 56379 0.68 0.446184
Target:  5'- cGAAGCcgcGGUucuUCGCCGACugCUCGCCGa -3'
miRNA:   3'- -UUUCGcaaCCA---GGCGGCUG--GAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 60314 0.68 0.455737
Target:  5'- --uGCGguauUCCuucagcagcuuGCCGACCUCGCCGg -3'
miRNA:   3'- uuuCGCaaccAGG-----------CGGCUGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 40464 0.68 0.455737
Target:  5'- --cGCGgcagacaGG-CCGUCGACgUCGCCGa -3'
miRNA:   3'- uuuCGCaa-----CCaGGCGGCUGgAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 6515 0.67 0.475166
Target:  5'- -cAGCG------CGCCGACCUCGCCGu -3'
miRNA:   3'- uuUCGCaaccagGCGGCUGGAGCGGC- -5'
24032 3' -58.8 NC_005262.1 + 42475 0.67 0.475166
Target:  5'- gAGAGgGUgacGGUCUGuCCGGCCU-GCCa -3'
miRNA:   3'- -UUUCgCAa--CCAGGC-GGCUGGAgCGGc -5'
24032 3' -58.8 NC_005262.1 + 59062 0.67 0.485034
Target:  5'- gGAGGCGUgaGG-CCGCCGGCg--GCCGg -3'
miRNA:   3'- -UUUCGCAa-CCaGGCGGCUGgagCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.