miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24032 5' -48.1 NC_005262.1 + 61645 0.66 0.989209
Target:  5'- gGCGAGGAGgaaGUGCUguaccGCGGCGc -3'
miRNA:   3'- gCGUUCUUCag-CAUGAagcu-UGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 48256 0.66 0.989209
Target:  5'- gGCAAugauGggGaCGUAUgcCGGGCAGCGc -3'
miRNA:   3'- gCGUU----CuuCaGCAUGaaGCUUGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 57282 0.66 0.98761
Target:  5'- gGCAGGuccgGGUCGaGCgggagcgacaCGAGCGGCGa -3'
miRNA:   3'- gCGUUCu---UCAGCaUGaa--------GCUUGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 54096 0.66 0.985834
Target:  5'- aGCAGGuuGcCGUGCUUCGccgugaaGGCGu -3'
miRNA:   3'- gCGUUCuuCaGCAUGAAGCuug----UCGC- -5'
24032 5' -48.1 NC_005262.1 + 12858 0.66 0.983869
Target:  5'- gGCGuuuAGGcCGUugUUCGuauGCAGCGg -3'
miRNA:   3'- gCGUuc-UUCaGCAugAAGCu--UGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 33865 0.67 0.981705
Target:  5'- aGCGAuGAGGUCGguaGCggCGAuCGGCa -3'
miRNA:   3'- gCGUU-CUUCAGCa--UGaaGCUuGUCGc -5'
24032 5' -48.1 NC_005262.1 + 1743 0.67 0.981705
Target:  5'- uGCGAGggGcgCGggaUUCGAGCucGCGa -3'
miRNA:   3'- gCGUUCuuCa-GCaugAAGCUUGu-CGC- -5'
24032 5' -48.1 NC_005262.1 + 61304 0.67 0.973903
Target:  5'- uCGC--GggGUCGgauauggGCagcaugUCGAGCAGCGa -3'
miRNA:   3'- -GCGuuCuuCAGCa------UGa-----AGCUUGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 15599 0.67 0.970189
Target:  5'- gCGCGAGGAGcgCGUGCggcaggagcgcaUCGAggcGCGGCu -3'
miRNA:   3'- -GCGUUCUUCa-GCAUGa-----------AGCU---UGUCGc -5'
24032 5' -48.1 NC_005262.1 + 55389 0.68 0.967511
Target:  5'- gCGCAAGcAGaUCGaGCgccgcaUCGAGCAGCu -3'
miRNA:   3'- -GCGUUCuUC-AGCaUGa-----AGCUUGUCGc -5'
24032 5' -48.1 NC_005262.1 + 12845 0.68 0.967511
Target:  5'- uCGCGGGAAccGUCGUGC--CGAGCuucGCGc -3'
miRNA:   3'- -GCGUUCUU--CAGCAUGaaGCUUGu--CGC- -5'
24032 5' -48.1 NC_005262.1 + 30190 0.69 0.951559
Target:  5'- gGCGAGAAGaaaUCGacGCUgaUCGAGCAGUu -3'
miRNA:   3'- gCGUUCUUC---AGCa-UGA--AGCUUGUCGc -5'
24032 5' -48.1 NC_005262.1 + 7379 0.69 0.946872
Target:  5'- gCGCGAGAA--CGUGCcgcUCGAAuCGGCGa -3'
miRNA:   3'- -GCGUUCUUcaGCAUGa--AGCUU-GUCGC- -5'
24032 5' -48.1 NC_005262.1 + 35217 0.69 0.936081
Target:  5'- cCGCAaggaugcGGAGGUCGgcgGCgcgaUCG-GCAGCGg -3'
miRNA:   3'- -GCGU-------UCUUCAGCa--UGa---AGCuUGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 48049 0.7 0.925198
Target:  5'- gCGCGAGAGGUCGUucgcgcCUUCGGugAa-- -3'
miRNA:   3'- -GCGUUCUUCAGCAu-----GAAGCUugUcgc -5'
24032 5' -48.1 NC_005262.1 + 33983 0.7 0.92277
Target:  5'- uGCuGGAcGUCGUGCguaacaugggcgCGGACGGCGu -3'
miRNA:   3'- gCGuUCUuCAGCAUGaa----------GCUUGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 16633 0.7 0.905839
Target:  5'- gGCGAuaucGUCGUGCUgcgCGAGCAcGCGg -3'
miRNA:   3'- gCGUUcuu-CAGCAUGAa--GCUUGU-CGC- -5'
24032 5' -48.1 NC_005262.1 + 13244 0.71 0.883867
Target:  5'- cCGcCAAGGAGUUGUGC--CGcGCAGCGc -3'
miRNA:   3'- -GC-GUUCUUCAGCAUGaaGCuUGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 61479 0.71 0.859409
Target:  5'- gCGCGcGAGGUCGUAgUagCGGcugcGCAGCGg -3'
miRNA:   3'- -GCGUuCUUCAGCAUgAa-GCU----UGUCGC- -5'
24032 5' -48.1 NC_005262.1 + 6975 0.72 0.841819
Target:  5'- uGCAGcucgaaucgguGAAGUaCGgcgacGCUUCGAACAGCGc -3'
miRNA:   3'- gCGUU-----------CUUCA-GCa----UGAAGCUUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.