miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 11271 0.66 0.825085
Target:  5'- cGCGCA-CGAUCAcGgcgGCGUCG-UCGg -3'
miRNA:   3'- aCGCGUaGCUGGUuCa--CGCAGUgAGC- -5'
24033 3' -54 NC_005262.1 + 63044 0.66 0.819583
Target:  5'- cGCGUGUCGGCCGGaaGCGacgcgcgcaaaucgCGCUCGu -3'
miRNA:   3'- aCGCGUAGCUGGUUcaCGCa-------------GUGAGC- -5'
24033 3' -54 NC_005262.1 + 7246 0.66 0.813074
Target:  5'- aGCgGCAUgCGGCCGGGUguuucgccuguuugGCGUCGCa-- -3'
miRNA:   3'- aCG-CGUA-GCUGGUUCA--------------CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 31314 0.66 0.806473
Target:  5'- gGCGCGUCGAUCGAcagGCG-CGCg-- -3'
miRNA:   3'- aCGCGUAGCUGGUUca-CGCaGUGagc -5'
24033 3' -54 NC_005262.1 + 58531 0.66 0.806473
Target:  5'- cGCGCA-CGccuGCCGGG-GCGUC-CUUGa -3'
miRNA:   3'- aCGCGUaGC---UGGUUCaCGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 43137 0.66 0.806473
Target:  5'- cGCGCGgugcCGGCCGGGU-CGaugUACUCGu -3'
miRNA:   3'- aCGCGUa---GCUGGUUCAcGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 30487 0.66 0.805523
Target:  5'- aGCGCAcgCGGCUcgugcuguacucgGGGUGCGccUUGCUCGu -3'
miRNA:   3'- aCGCGUa-GCUGG-------------UUCACGC--AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 14227 0.66 0.796889
Target:  5'- gGCGCgauGUCGACCAcgcacgagcAGgacgcaGCGUCGC-CGg -3'
miRNA:   3'- aCGCG---UAGCUGGU---------UCa-----CGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 28816 0.66 0.796889
Target:  5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3'
miRNA:   3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 11770 0.66 0.796889
Target:  5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3'
miRNA:   3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5'
24033 3' -54 NC_005262.1 + 51910 0.66 0.796889
Target:  5'- cGCGaCGUCGGCCGcgcugaAGU-CGUCGC-CGa -3'
miRNA:   3'- aCGC-GUAGCUGGU------UCAcGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 20586 0.66 0.796889
Target:  5'- aGCGCcgCG-CCGauGGUGCGcgcgauuacgCACUCGc -3'
miRNA:   3'- aCGCGuaGCuGGU--UCACGCa---------GUGAGC- -5'
24033 3' -54 NC_005262.1 + 44415 0.66 0.793007
Target:  5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3'
miRNA:   3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 48170 0.67 0.787134
Target:  5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3'
miRNA:   3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5'
24033 3' -54 NC_005262.1 + 16990 0.67 0.767151
Target:  5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3'
miRNA:   3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 62079 0.67 0.767151
Target:  5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3'
miRNA:   3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 59264 0.67 0.767151
Target:  5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3'
miRNA:   3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 51259 0.67 0.756947
Target:  5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3'
miRNA:   3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 35320 0.67 0.746615
Target:  5'- gGCGCAUCGGCCAucacgGUCACg-- -3'
miRNA:   3'- aCGCGUAGCUGGUucacgCAGUGagc -5'
24033 3' -54 NC_005262.1 + 59024 0.68 0.725616
Target:  5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3'
miRNA:   3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.