Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24033 | 3' | -54 | NC_005262.1 | + | 58531 | 0.66 | 0.806473 |
Target: 5'- cGCGCA-CGccuGCCGGG-GCGUC-CUUGa -3' miRNA: 3'- aCGCGUaGC---UGGUUCaCGCAGuGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 20586 | 0.66 | 0.796889 |
Target: 5'- aGCGCcgCG-CCGauGGUGCGcgcgauuacgCACUCGc -3' miRNA: 3'- aCGCGuaGCuGGU--UCACGCa---------GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 51910 | 0.66 | 0.796889 |
Target: 5'- cGCGaCGUCGGCCGcgcugaAGU-CGUCGC-CGa -3' miRNA: 3'- aCGC-GUAGCUGGU------UCAcGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 30487 | 0.66 | 0.805523 |
Target: 5'- aGCGCAcgCGGCUcgugcuguacucgGGGUGCGccUUGCUCGu -3' miRNA: 3'- aCGCGUa-GCUGG-------------UUCACGC--AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 31314 | 0.66 | 0.806473 |
Target: 5'- gGCGCGUCGAUCGAcagGCG-CGCg-- -3' miRNA: 3'- aCGCGUAGCUGGUUca-CGCaGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 11271 | 0.66 | 0.825085 |
Target: 5'- cGCGCA-CGAUCAcGgcgGCGUCG-UCGg -3' miRNA: 3'- aCGCGUaGCUGGUuCa--CGCAGUgAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 14227 | 0.66 | 0.796889 |
Target: 5'- gGCGCgauGUCGACCAcgcacgagcAGgacgcaGCGUCGC-CGg -3' miRNA: 3'- aCGCG---UAGCUGGU---------UCa-----CGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 43137 | 0.66 | 0.806473 |
Target: 5'- cGCGCGgugcCGGCCGGGU-CGaugUACUCGu -3' miRNA: 3'- aCGCGUa---GCUGGUUCAcGCa--GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 7246 | 0.66 | 0.813074 |
Target: 5'- aGCgGCAUgCGGCCGGGUguuucgccuguuugGCGUCGCa-- -3' miRNA: 3'- aCG-CGUA-GCUGGUUCA--------------CGCAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 63044 | 0.66 | 0.819583 |
Target: 5'- cGCGUGUCGGCCGGaaGCGacgcgcgcaaaucgCGCUCGu -3' miRNA: 3'- aCGCGUAGCUGGUUcaCGCa-------------GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 28816 | 0.66 | 0.796889 |
Target: 5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3' miRNA: 3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 11770 | 0.66 | 0.796889 |
Target: 5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3' miRNA: 3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 44415 | 0.66 | 0.793007 |
Target: 5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3' miRNA: 3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 16990 | 0.67 | 0.767151 |
Target: 5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3' miRNA: 3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 35320 | 0.67 | 0.746615 |
Target: 5'- gGCGCAUCGGCCAucacgGUCACg-- -3' miRNA: 3'- aCGCGUAGCUGGUucacgCAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 51259 | 0.67 | 0.756947 |
Target: 5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3' miRNA: 3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 48170 | 0.67 | 0.787134 |
Target: 5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3' miRNA: 3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 62079 | 0.67 | 0.767151 |
Target: 5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3' miRNA: 3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 59264 | 0.67 | 0.767151 |
Target: 5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3' miRNA: 3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 1550 | 0.68 | 0.714971 |
Target: 5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3' miRNA: 3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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