miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 31702 1.1 0.001382
Target:  5'- gUGCGCAUCGACCAAGUGCGUCACUCGg -3'
miRNA:   3'- -ACGCGUAGCUGGUUCACGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 43181 0.76 0.300884
Target:  5'- cUGUGCAUCGGCCAggacaucuacgAGUGgGacgCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCUGGU-----------UCACgCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 8259 0.75 0.323956
Target:  5'- cGCGCGaaagcagCGGCCGAGgaagcugcccGCGUCGCUCGc -3'
miRNA:   3'- aCGCGUa------GCUGGUUCa---------CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 34754 0.74 0.382794
Target:  5'- gUGCGCGUCGugCcg--GCGcCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCugGuucaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 33412 0.73 0.428956
Target:  5'- cGCGCAgCGACgCAGuUGCGUCcgACUCGa -3'
miRNA:   3'- aCGCGUaGCUG-GUUcACGCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 32889 0.71 0.540794
Target:  5'- cGCGUcgaacGUCGGCCAAGccggcgGCGUCGCa-- -3'
miRNA:   3'- aCGCG-----UAGCUGGUUCa-----CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 5082 0.71 0.55043
Target:  5'- gGCGCGUgCGACCGgcucggcGGUGCG-CGCcCGg -3'
miRNA:   3'- aCGCGUA-GCUGGU-------UCACGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 23256 0.71 0.551504
Target:  5'- -uCGCGUCGAUCAucGGUGCGUCcCgUCGc -3'
miRNA:   3'- acGCGUAGCUGGU--UCACGCAGuG-AGC- -5'
24033 3' -54 NC_005262.1 + 49581 0.71 0.551504
Target:  5'- cGUGCAgaaGGCCGAcaagaaUGUGUCGCUCGg -3'
miRNA:   3'- aCGCGUag-CUGGUUc-----ACGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 29162 0.71 0.551504
Target:  5'- gGCGCG-CGACCA--UGCGUCAggCGg -3'
miRNA:   3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 49447 0.7 0.562278
Target:  5'- cGCGCGUCG-CCGAGU-CGUCAg-CGa -3'
miRNA:   3'- aCGCGUAGCuGGUUCAcGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 26633 0.7 0.562278
Target:  5'- aGCGCGUCGGCCGcuucggAGUGgccgccggucuUGUCggGCUCGg -3'
miRNA:   3'- aCGCGUAGCUGGU------UCAC-----------GCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 17344 0.7 0.562278
Target:  5'- cGCGCAgcUCGAaCAGGcGCGUCucCUCGg -3'
miRNA:   3'- aCGCGU--AGCUgGUUCaCGCAGu-GAGC- -5'
24033 3' -54 NC_005262.1 + 35535 0.7 0.594903
Target:  5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3'
miRNA:   3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 53426 0.7 0.616825
Target:  5'- cGCGCgGUCGGCgAGGUagcggcgcgcGCGgUCGCUCGc -3'
miRNA:   3'- aCGCG-UAGCUGgUUCA----------CGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 61051 0.69 0.62781
Target:  5'- -aCGCAUCGAgCGAGUGauuGUCGCUg- -3'
miRNA:   3'- acGCGUAGCUgGUUCACg--CAGUGAgc -5'
24033 3' -54 NC_005262.1 + 45419 0.69 0.62781
Target:  5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3'
miRNA:   3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5'
24033 3' -54 NC_005262.1 + 20713 0.69 0.62781
Target:  5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3'
miRNA:   3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 30914 0.69 0.62781
Target:  5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3'
miRNA:   3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 9063 0.69 0.632206
Target:  5'- aUGCGCgggGUUGGCUggcuccggaugggugGAGUGCGUCGCcCGc -3'
miRNA:   3'- -ACGCG---UAGCUGG---------------UUCACGCAGUGaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.