miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 766 0.69 0.638799
Target:  5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3'
miRNA:   3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5'
24033 3' -54 NC_005262.1 + 44342 0.69 0.649782
Target:  5'- cGCGCGUCaGCCAguGGcGCGagccaUCGCUCGc -3'
miRNA:   3'- aCGCGUAGcUGGU--UCaCGC-----AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 14004 0.69 0.649782
Target:  5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3'
miRNA:   3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 27105 0.68 0.681505
Target:  5'- gGCuGCuUCGAUCAuggucauuccuccAGUGCGgcgCGCUCGg -3'
miRNA:   3'- aCG-CGuAGCUGGU-------------UCACGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 34641 0.68 0.693448
Target:  5'- --aGC-UCGACCcg--GCGUCGCUCGa -3'
miRNA:   3'- acgCGuAGCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 53935 0.68 0.701013
Target:  5'- gGCGCAgcUCGACCAGcucacggauggcgcGUGggaacaGUCGCUCa -3'
miRNA:   3'- aCGCGU--AGCUGGUU--------------CACg-----CAGUGAGc -5'
24033 3' -54 NC_005262.1 + 46468 0.68 0.704245
Target:  5'- cGCGCcuguUCGGCCuugauUGCGUC-CUCGc -3'
miRNA:   3'- aCGCGu---AGCUGGuuc--ACGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 1550 0.68 0.714971
Target:  5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3'
miRNA:   3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5'
24033 3' -54 NC_005262.1 + 23893 0.68 0.714971
Target:  5'- cUGCGCGucgucUCGAUCGuGGUGCGcuUCGCaUCGa -3'
miRNA:   3'- -ACGCGU-----AGCUGGU-UCACGC--AGUG-AGC- -5'
24033 3' -54 NC_005262.1 + 62808 0.68 0.725616
Target:  5'- aGCGCGcCGAUCAgGGUGCGUgCGCg-- -3'
miRNA:   3'- aCGCGUaGCUGGU-UCACGCA-GUGagc -5'
24033 3' -54 NC_005262.1 + 59024 0.68 0.725616
Target:  5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3'
miRNA:   3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5'
24033 3' -54 NC_005262.1 + 35320 0.67 0.746615
Target:  5'- gGCGCAUCGGCCAucacgGUCACg-- -3'
miRNA:   3'- aCGCGUAGCUGGUucacgCAGUGagc -5'
24033 3' -54 NC_005262.1 + 51259 0.67 0.756947
Target:  5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3'
miRNA:   3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 62079 0.67 0.767151
Target:  5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3'
miRNA:   3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 59264 0.67 0.767151
Target:  5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3'
miRNA:   3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 16990 0.67 0.767151
Target:  5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3'
miRNA:   3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 48170 0.67 0.787134
Target:  5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3'
miRNA:   3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5'
24033 3' -54 NC_005262.1 + 44415 0.66 0.793007
Target:  5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3'
miRNA:   3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 11770 0.66 0.796889
Target:  5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3'
miRNA:   3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.