miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 59024 0.68 0.725616
Target:  5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3'
miRNA:   3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5'
24033 3' -54 NC_005262.1 + 1550 0.68 0.714971
Target:  5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3'
miRNA:   3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5'
24033 3' -54 NC_005262.1 + 23893 0.68 0.714971
Target:  5'- cUGCGCGucgucUCGAUCGuGGUGCGcuUCGCaUCGa -3'
miRNA:   3'- -ACGCGU-----AGCUGGU-UCACGC--AGUG-AGC- -5'
24033 3' -54 NC_005262.1 + 46468 0.68 0.704245
Target:  5'- cGCGCcuguUCGGCCuugauUGCGUC-CUCGc -3'
miRNA:   3'- aCGCGu---AGCUGGuuc--ACGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 53935 0.68 0.701013
Target:  5'- gGCGCAgcUCGACCAGcucacggauggcgcGUGggaacaGUCGCUCa -3'
miRNA:   3'- aCGCGU--AGCUGGUU--------------CACg-----CAGUGAGc -5'
24033 3' -54 NC_005262.1 + 34641 0.68 0.693448
Target:  5'- --aGC-UCGACCcg--GCGUCGCUCGa -3'
miRNA:   3'- acgCGuAGCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 27105 0.68 0.681505
Target:  5'- gGCuGCuUCGAUCAuggucauuccuccAGUGCGgcgCGCUCGg -3'
miRNA:   3'- aCG-CGuAGCUGGU-------------UCACGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 14004 0.69 0.649782
Target:  5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3'
miRNA:   3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 44342 0.69 0.649782
Target:  5'- cGCGCGUCaGCCAguGGcGCGagccaUCGCUCGc -3'
miRNA:   3'- aCGCGUAGcUGGU--UCaCGC-----AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 766 0.69 0.638799
Target:  5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3'
miRNA:   3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5'
24033 3' -54 NC_005262.1 + 9063 0.69 0.632206
Target:  5'- aUGCGCgggGUUGGCUggcuccggaugggugGAGUGCGUCGCcCGc -3'
miRNA:   3'- -ACGCG---UAGCUGG---------------UUCACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 30914 0.69 0.62781
Target:  5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3'
miRNA:   3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 61051 0.69 0.62781
Target:  5'- -aCGCAUCGAgCGAGUGauuGUCGCUg- -3'
miRNA:   3'- acGCGUAGCUgGUUCACg--CAGUGAgc -5'
24033 3' -54 NC_005262.1 + 45419 0.69 0.62781
Target:  5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3'
miRNA:   3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5'
24033 3' -54 NC_005262.1 + 20713 0.69 0.62781
Target:  5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3'
miRNA:   3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 53426 0.7 0.616825
Target:  5'- cGCGCgGUCGGCgAGGUagcggcgcgcGCGgUCGCUCGc -3'
miRNA:   3'- aCGCG-UAGCUGgUUCA----------CGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 35535 0.7 0.594903
Target:  5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3'
miRNA:   3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 49447 0.7 0.562278
Target:  5'- cGCGCGUCG-CCGAGU-CGUCAg-CGa -3'
miRNA:   3'- aCGCGUAGCuGGUUCAcGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 17344 0.7 0.562278
Target:  5'- cGCGCAgcUCGAaCAGGcGCGUCucCUCGg -3'
miRNA:   3'- aCGCGU--AGCUgGUUCaCGCAGu-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.