miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 766 0.69 0.638799
Target:  5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3'
miRNA:   3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5'
24033 3' -54 NC_005262.1 + 1550 0.68 0.714971
Target:  5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3'
miRNA:   3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5'
24033 3' -54 NC_005262.1 + 5082 0.71 0.55043
Target:  5'- gGCGCGUgCGACCGgcucggcGGUGCG-CGCcCGg -3'
miRNA:   3'- aCGCGUA-GCUGGU-------UCACGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 7246 0.66 0.813074
Target:  5'- aGCgGCAUgCGGCCGGGUguuucgccuguuugGCGUCGCa-- -3'
miRNA:   3'- aCG-CGUA-GCUGGUUCA--------------CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 8259 0.75 0.323956
Target:  5'- cGCGCGaaagcagCGGCCGAGgaagcugcccGCGUCGCUCGc -3'
miRNA:   3'- aCGCGUa------GCUGGUUCa---------CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 9063 0.69 0.632206
Target:  5'- aUGCGCgggGUUGGCUggcuccggaugggugGAGUGCGUCGCcCGc -3'
miRNA:   3'- -ACGCG---UAGCUGG---------------UUCACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 11271 0.66 0.825085
Target:  5'- cGCGCA-CGAUCAcGgcgGCGUCG-UCGg -3'
miRNA:   3'- aCGCGUaGCUGGUuCa--CGCAGUgAGC- -5'
24033 3' -54 NC_005262.1 + 11770 0.66 0.796889
Target:  5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3'
miRNA:   3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5'
24033 3' -54 NC_005262.1 + 14004 0.69 0.649782
Target:  5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3'
miRNA:   3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 14227 0.66 0.796889
Target:  5'- gGCGCgauGUCGACCAcgcacgagcAGgacgcaGCGUCGC-CGg -3'
miRNA:   3'- aCGCG---UAGCUGGU---------UCa-----CGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 16990 0.67 0.767151
Target:  5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3'
miRNA:   3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 17344 0.7 0.562278
Target:  5'- cGCGCAgcUCGAaCAGGcGCGUCucCUCGg -3'
miRNA:   3'- aCGCGU--AGCUgGUUCaCGCAGu-GAGC- -5'
24033 3' -54 NC_005262.1 + 20586 0.66 0.796889
Target:  5'- aGCGCcgCG-CCGauGGUGCGcgcgauuacgCACUCGc -3'
miRNA:   3'- aCGCGuaGCuGGU--UCACGCa---------GUGAGC- -5'
24033 3' -54 NC_005262.1 + 20713 0.69 0.62781
Target:  5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3'
miRNA:   3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 23256 0.71 0.551504
Target:  5'- -uCGCGUCGAUCAucGGUGCGUCcCgUCGc -3'
miRNA:   3'- acGCGUAGCUGGU--UCACGCAGuG-AGC- -5'
24033 3' -54 NC_005262.1 + 23893 0.68 0.714971
Target:  5'- cUGCGCGucgucUCGAUCGuGGUGCGcuUCGCaUCGa -3'
miRNA:   3'- -ACGCGU-----AGCUGGU-UCACGC--AGUG-AGC- -5'
24033 3' -54 NC_005262.1 + 26633 0.7 0.562278
Target:  5'- aGCGCGUCGGCCGcuucggAGUGgccgccggucuUGUCggGCUCGg -3'
miRNA:   3'- aCGCGUAGCUGGU------UCAC-----------GCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 27105 0.68 0.681505
Target:  5'- gGCuGCuUCGAUCAuggucauuccuccAGUGCGgcgCGCUCGg -3'
miRNA:   3'- aCG-CGuAGCUGGU-------------UCACGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 28816 0.66 0.796889
Target:  5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3'
miRNA:   3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.