miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 29162 0.71 0.551504
Target:  5'- gGCGCG-CGACCA--UGCGUCAggCGg -3'
miRNA:   3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 30487 0.66 0.805523
Target:  5'- aGCGCAcgCGGCUcgugcuguacucgGGGUGCGccUUGCUCGu -3'
miRNA:   3'- aCGCGUa-GCUGG-------------UUCACGC--AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 30914 0.69 0.62781
Target:  5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3'
miRNA:   3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 31314 0.66 0.806473
Target:  5'- gGCGCGUCGAUCGAcagGCG-CGCg-- -3'
miRNA:   3'- aCGCGUAGCUGGUUca-CGCaGUGagc -5'
24033 3' -54 NC_005262.1 + 31702 1.1 0.001382
Target:  5'- gUGCGCAUCGACCAAGUGCGUCACUCGg -3'
miRNA:   3'- -ACGCGUAGCUGGUUCACGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 32889 0.71 0.540794
Target:  5'- cGCGUcgaacGUCGGCCAAGccggcgGCGUCGCa-- -3'
miRNA:   3'- aCGCG-----UAGCUGGUUCa-----CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 33412 0.73 0.428956
Target:  5'- cGCGCAgCGACgCAGuUGCGUCcgACUCGa -3'
miRNA:   3'- aCGCGUaGCUG-GUUcACGCAG--UGAGC- -5'
24033 3' -54 NC_005262.1 + 34641 0.68 0.693448
Target:  5'- --aGC-UCGACCcg--GCGUCGCUCGa -3'
miRNA:   3'- acgCGuAGCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 34754 0.74 0.382794
Target:  5'- gUGCGCGUCGugCcg--GCGcCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCugGuucaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 35320 0.67 0.746615
Target:  5'- gGCGCAUCGGCCAucacgGUCACg-- -3'
miRNA:   3'- aCGCGUAGCUGGUucacgCAGUGagc -5'
24033 3' -54 NC_005262.1 + 35535 0.7 0.594903
Target:  5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3'
miRNA:   3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 43137 0.66 0.806473
Target:  5'- cGCGCGgugcCGGCCGGGU-CGaugUACUCGu -3'
miRNA:   3'- aCGCGUa---GCUGGUUCAcGCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 43181 0.76 0.300884
Target:  5'- cUGUGCAUCGGCCAggacaucuacgAGUGgGacgCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCUGGU-----------UCACgCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 44342 0.69 0.649782
Target:  5'- cGCGCGUCaGCCAguGGcGCGagccaUCGCUCGc -3'
miRNA:   3'- aCGCGUAGcUGGU--UCaCGC-----AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 44415 0.66 0.793007
Target:  5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3'
miRNA:   3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 45419 0.69 0.62781
Target:  5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3'
miRNA:   3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5'
24033 3' -54 NC_005262.1 + 46468 0.68 0.704245
Target:  5'- cGCGCcuguUCGGCCuugauUGCGUC-CUCGc -3'
miRNA:   3'- aCGCGu---AGCUGGuuc--ACGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 48170 0.67 0.787134
Target:  5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3'
miRNA:   3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5'
24033 3' -54 NC_005262.1 + 49447 0.7 0.562278
Target:  5'- cGCGCGUCG-CCGAGU-CGUCAg-CGa -3'
miRNA:   3'- aCGCGUAGCuGGUUCAcGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 49581 0.71 0.551504
Target:  5'- cGUGCAgaaGGCCGAcaagaaUGUGUCGCUCGg -3'
miRNA:   3'- aCGCGUag-CUGGUUc-----ACGCAGUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.