miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 63044 0.66 0.819583
Target:  5'- cGCGUGUCGGCCGGaaGCGacgcgcgcaaaucgCGCUCGu -3'
miRNA:   3'- aCGCGUAGCUGGUUcaCGCa-------------GUGAGC- -5'
24033 3' -54 NC_005262.1 + 62808 0.68 0.725616
Target:  5'- aGCGCGcCGAUCAgGGUGCGUgCGCg-- -3'
miRNA:   3'- aCGCGUaGCUGGU-UCACGCA-GUGagc -5'
24033 3' -54 NC_005262.1 + 62079 0.67 0.767151
Target:  5'- gGCGUAgcuucUCGACCucaUGCGUCGC-CGc -3'
miRNA:   3'- aCGCGU-----AGCUGGuucACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 61051 0.69 0.62781
Target:  5'- -aCGCAUCGAgCGAGUGauuGUCGCUg- -3'
miRNA:   3'- acGCGUAGCUgGUUCACg--CAGUGAgc -5'
24033 3' -54 NC_005262.1 + 59264 0.67 0.767151
Target:  5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3'
miRNA:   3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 59024 0.68 0.725616
Target:  5'- cUGCGCGcCGACCGAGaaGCGcgCGCcaUCGg -3'
miRNA:   3'- -ACGCGUaGCUGGUUCa-CGCa-GUG--AGC- -5'
24033 3' -54 NC_005262.1 + 58531 0.66 0.806473
Target:  5'- cGCGCA-CGccuGCCGGG-GCGUC-CUUGa -3'
miRNA:   3'- aCGCGUaGC---UGGUUCaCGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 53935 0.68 0.701013
Target:  5'- gGCGCAgcUCGACCAGcucacggauggcgcGUGggaacaGUCGCUCa -3'
miRNA:   3'- aCGCGU--AGCUGGUU--------------CACg-----CAGUGAGc -5'
24033 3' -54 NC_005262.1 + 53426 0.7 0.616825
Target:  5'- cGCGCgGUCGGCgAGGUagcggcgcgcGCGgUCGCUCGc -3'
miRNA:   3'- aCGCG-UAGCUGgUUCA----------CGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 51910 0.66 0.796889
Target:  5'- cGCGaCGUCGGCCGcgcugaAGU-CGUCGC-CGa -3'
miRNA:   3'- aCGC-GUAGCUGGU------UCAcGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 51259 0.67 0.756947
Target:  5'- cGCGuCGUCGGCUgccuGcUGCG-CGCUCGg -3'
miRNA:   3'- aCGC-GUAGCUGGuu--C-ACGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 49581 0.71 0.551504
Target:  5'- cGUGCAgaaGGCCGAcaagaaUGUGUCGCUCGg -3'
miRNA:   3'- aCGCGUag-CUGGUUc-----ACGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 49447 0.7 0.562278
Target:  5'- cGCGCGUCG-CCGAGU-CGUCAg-CGa -3'
miRNA:   3'- aCGCGUAGCuGGUUCAcGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 48170 0.67 0.787134
Target:  5'- cGCGCGUCGgcGCCGGGcgGCucGUCGCg-- -3'
miRNA:   3'- aCGCGUAGC--UGGUUCa-CG--CAGUGagc -5'
24033 3' -54 NC_005262.1 + 46468 0.68 0.704245
Target:  5'- cGCGCcuguUCGGCCuugauUGCGUC-CUCGc -3'
miRNA:   3'- aCGCGu---AGCUGGuuc--ACGCAGuGAGC- -5'
24033 3' -54 NC_005262.1 + 45419 0.69 0.62781
Target:  5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3'
miRNA:   3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5'
24033 3' -54 NC_005262.1 + 44415 0.66 0.793007
Target:  5'- cGCGCGccgcacacgauggCGACCuc--GUGUCGCUCGg -3'
miRNA:   3'- aCGCGUa------------GCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 44342 0.69 0.649782
Target:  5'- cGCGCGUCaGCCAguGGcGCGagccaUCGCUCGc -3'
miRNA:   3'- aCGCGUAGcUGGU--UCaCGC-----AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 43181 0.76 0.300884
Target:  5'- cUGUGCAUCGGCCAggacaucuacgAGUGgGacgCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCUGGU-----------UCACgCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 43137 0.66 0.806473
Target:  5'- cGCGCGgugcCGGCCGGGU-CGaugUACUCGu -3'
miRNA:   3'- aCGCGUa---GCUGGUUCAcGCa--GUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.