Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24033 | 3' | -54 | NC_005262.1 | + | 35535 | 0.7 | 0.594903 |
Target: 5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3' miRNA: 3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 35320 | 0.67 | 0.746615 |
Target: 5'- gGCGCAUCGGCCAucacgGUCACg-- -3' miRNA: 3'- aCGCGUAGCUGGUucacgCAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 34754 | 0.74 | 0.382794 |
Target: 5'- gUGCGCGUCGugCcg--GCGcCGCUCGa -3' miRNA: 3'- -ACGCGUAGCugGuucaCGCaGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 34641 | 0.68 | 0.693448 |
Target: 5'- --aGC-UCGACCcg--GCGUCGCUCGa -3' miRNA: 3'- acgCGuAGCUGGuucaCGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 33412 | 0.73 | 0.428956 |
Target: 5'- cGCGCAgCGACgCAGuUGCGUCcgACUCGa -3' miRNA: 3'- aCGCGUaGCUG-GUUcACGCAG--UGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 32889 | 0.71 | 0.540794 |
Target: 5'- cGCGUcgaacGUCGGCCAAGccggcgGCGUCGCa-- -3' miRNA: 3'- aCGCG-----UAGCUGGUUCa-----CGCAGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 31702 | 1.1 | 0.001382 |
Target: 5'- gUGCGCAUCGACCAAGUGCGUCACUCGg -3' miRNA: 3'- -ACGCGUAGCUGGUUCACGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 31314 | 0.66 | 0.806473 |
Target: 5'- gGCGCGUCGAUCGAcagGCG-CGCg-- -3' miRNA: 3'- aCGCGUAGCUGGUUca-CGCaGUGagc -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 30914 | 0.69 | 0.62781 |
Target: 5'- aUGCGCGUCG-CCGAGacGCG-CAC-CGg -3' miRNA: 3'- -ACGCGUAGCuGGUUCa-CGCaGUGaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 30487 | 0.66 | 0.805523 |
Target: 5'- aGCGCAcgCGGCUcgugcuguacucgGGGUGCGccUUGCUCGu -3' miRNA: 3'- aCGCGUa-GCUGG-------------UUCACGC--AGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 29162 | 0.71 | 0.551504 |
Target: 5'- gGCGCG-CGACCA--UGCGUCAggCGg -3' miRNA: 3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 28816 | 0.66 | 0.796889 |
Target: 5'- cGCGCAUC--UCGAGcucGCGUCgcGCUCGa -3' miRNA: 3'- aCGCGUAGcuGGUUCa--CGCAG--UGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 27105 | 0.68 | 0.681505 |
Target: 5'- gGCuGCuUCGAUCAuggucauuccuccAGUGCGgcgCGCUCGg -3' miRNA: 3'- aCG-CGuAGCUGGU-------------UCACGCa--GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 26633 | 0.7 | 0.562278 |
Target: 5'- aGCGCGUCGGCCGcuucggAGUGgccgccggucuUGUCggGCUCGg -3' miRNA: 3'- aCGCGUAGCUGGU------UCAC-----------GCAG--UGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 23893 | 0.68 | 0.714971 |
Target: 5'- cUGCGCGucgucUCGAUCGuGGUGCGcuUCGCaUCGa -3' miRNA: 3'- -ACGCGU-----AGCUGGU-UCACGC--AGUG-AGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 23256 | 0.71 | 0.551504 |
Target: 5'- -uCGCGUCGAUCAucGGUGCGUCcCgUCGc -3' miRNA: 3'- acGCGUAGCUGGU--UCACGCAGuG-AGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 20713 | 0.69 | 0.62781 |
Target: 5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3' miRNA: 3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 20586 | 0.66 | 0.796889 |
Target: 5'- aGCGCcgCG-CCGauGGUGCGcgcgauuacgCACUCGc -3' miRNA: 3'- aCGCGuaGCuGGU--UCACGCa---------GUGAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 17344 | 0.7 | 0.562278 |
Target: 5'- cGCGCAgcUCGAaCAGGcGCGUCucCUCGg -3' miRNA: 3'- aCGCGU--AGCUgGUUCaCGCAGu-GAGC- -5' |
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24033 | 3' | -54 | NC_005262.1 | + | 16990 | 0.67 | 0.767151 |
Target: 5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3' miRNA: 3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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