miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 14227 0.66 0.796889
Target:  5'- gGCGCgauGUCGACCAcgcacgagcAGgacgcaGCGUCGC-CGg -3'
miRNA:   3'- aCGCG---UAGCUGGU---------UCa-----CGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 14004 0.69 0.649782
Target:  5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3'
miRNA:   3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 11770 0.66 0.796889
Target:  5'- gGCGCGgccCGACCuGG-GCG-CGCUCc -3'
miRNA:   3'- aCGCGUa--GCUGGuUCaCGCaGUGAGc -5'
24033 3' -54 NC_005262.1 + 11271 0.66 0.825085
Target:  5'- cGCGCA-CGAUCAcGgcgGCGUCG-UCGg -3'
miRNA:   3'- aCGCGUaGCUGGUuCa--CGCAGUgAGC- -5'
24033 3' -54 NC_005262.1 + 9063 0.69 0.632206
Target:  5'- aUGCGCgggGUUGGCUggcuccggaugggugGAGUGCGUCGCcCGc -3'
miRNA:   3'- -ACGCG---UAGCUGG---------------UUCACGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 8259 0.75 0.323956
Target:  5'- cGCGCGaaagcagCGGCCGAGgaagcugcccGCGUCGCUCGc -3'
miRNA:   3'- aCGCGUa------GCUGGUUCa---------CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 7246 0.66 0.813074
Target:  5'- aGCgGCAUgCGGCCGGGUguuucgccuguuugGCGUCGCa-- -3'
miRNA:   3'- aCG-CGUA-GCUGGUUCA--------------CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 5082 0.71 0.55043
Target:  5'- gGCGCGUgCGACCGgcucggcGGUGCG-CGCcCGg -3'
miRNA:   3'- aCGCGUA-GCUGGU-------UCACGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 1550 0.68 0.714971
Target:  5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3'
miRNA:   3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5'
24033 3' -54 NC_005262.1 + 766 0.69 0.638799
Target:  5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3'
miRNA:   3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.