miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24033 3' -54 NC_005262.1 + 59264 0.67 0.767151
Target:  5'- cGCGCAggagCGAaaCGAGcGCGUCGCgCGg -3'
miRNA:   3'- aCGCGUa---GCUg-GUUCaCGCAGUGaGC- -5'
24033 3' -54 NC_005262.1 + 766 0.69 0.638799
Target:  5'- cGCGCucGUCG-CCGAGguucggGCGUgGCUUGa -3'
miRNA:   3'- aCGCG--UAGCuGGUUCa-----CGCAgUGAGC- -5'
24033 3' -54 NC_005262.1 + 14004 0.69 0.649782
Target:  5'- gUGUGUAUgGACCccagcGUGCaGUCGCUUGg -3'
miRNA:   3'- -ACGCGUAgCUGGuu---CACG-CAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 15718 0.69 0.649782
Target:  5'- aUGCGC-UCGACguGGcGCGcUCAUUCGc -3'
miRNA:   3'- -ACGCGuAGCUGguUCaCGC-AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 34641 0.68 0.693448
Target:  5'- --aGC-UCGACCcg--GCGUCGCUCGa -3'
miRNA:   3'- acgCGuAGCUGGuucaCGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 53935 0.68 0.701013
Target:  5'- gGCGCAgcUCGACCAGcucacggauggcgcGUGggaacaGUCGCUCa -3'
miRNA:   3'- aCGCGU--AGCUGGUU--------------CACg-----CAGUGAGc -5'
24033 3' -54 NC_005262.1 + 1550 0.68 0.714971
Target:  5'- aGCGUugcgCGACCAucUGCGUagGCUCGa -3'
miRNA:   3'- aCGCGua--GCUGGUucACGCAg-UGAGC- -5'
24033 3' -54 NC_005262.1 + 35320 0.67 0.746615
Target:  5'- gGCGCAUCGGCCAucacgGUCACg-- -3'
miRNA:   3'- aCGCGUAGCUGGUucacgCAGUGagc -5'
24033 3' -54 NC_005262.1 + 16990 0.67 0.767151
Target:  5'- cUGCuGCcgcCGGCCGAGcGCG-CGCUCGu -3'
miRNA:   3'- -ACG-CGua-GCUGGUUCaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 45419 0.69 0.62781
Target:  5'- cGCGCAaaacUCGGCCGGGcuuauggGCGg-GCUCGg -3'
miRNA:   3'- aCGCGU----AGCUGGUUCa------CGCagUGAGC- -5'
24033 3' -54 NC_005262.1 + 20713 0.69 0.62781
Target:  5'- gGCGCAgc--CCAucacGGUcGCGUCGCUCGg -3'
miRNA:   3'- aCGCGUagcuGGU----UCA-CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 35535 0.7 0.594903
Target:  5'- aGgGCuUCGGCCAAGccGCGaugUCGCUCGc -3'
miRNA:   3'- aCgCGuAGCUGGUUCa-CGC---AGUGAGC- -5'
24033 3' -54 NC_005262.1 + 43181 0.76 0.300884
Target:  5'- cUGUGCAUCGGCCAggacaucuacgAGUGgGacgCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCUGGU-----------UCACgCa--GUGAGC- -5'
24033 3' -54 NC_005262.1 + 8259 0.75 0.323956
Target:  5'- cGCGCGaaagcagCGGCCGAGgaagcugcccGCGUCGCUCGc -3'
miRNA:   3'- aCGCGUa------GCUGGUUCa---------CGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 34754 0.74 0.382794
Target:  5'- gUGCGCGUCGugCcg--GCGcCGCUCGa -3'
miRNA:   3'- -ACGCGUAGCugGuucaCGCaGUGAGC- -5'
24033 3' -54 NC_005262.1 + 32889 0.71 0.540794
Target:  5'- cGCGUcgaacGUCGGCCAAGccggcgGCGUCGCa-- -3'
miRNA:   3'- aCGCG-----UAGCUGGUUCa-----CGCAGUGagc -5'
24033 3' -54 NC_005262.1 + 5082 0.71 0.55043
Target:  5'- gGCGCGUgCGACCGgcucggcGGUGCG-CGCcCGg -3'
miRNA:   3'- aCGCGUA-GCUGGU-------UCACGCaGUGaGC- -5'
24033 3' -54 NC_005262.1 + 29162 0.71 0.551504
Target:  5'- gGCGCG-CGACCA--UGCGUCAggCGg -3'
miRNA:   3'- aCGCGUaGCUGGUucACGCAGUgaGC- -5'
24033 3' -54 NC_005262.1 + 49581 0.71 0.551504
Target:  5'- cGUGCAgaaGGCCGAcaagaaUGUGUCGCUCGg -3'
miRNA:   3'- aCGCGUag-CUGGUUc-----ACGCAGUGAGC- -5'
24033 3' -54 NC_005262.1 + 23256 0.71 0.551504
Target:  5'- -uCGCGUCGAUCAucGGUGCGUCcCgUCGc -3'
miRNA:   3'- acGCGUAGCUGGU--UCACGCAGuG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.